Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0012
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)                         29   3.3  
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)             29   5.7  
SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)         29   5.7  
SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_49192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   10.0 

>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1444

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 692 VLACKIRTPVHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           V A ++   +HR +   P  L F P  LNTH  S A
Sbjct: 609 VKAKEVWRVIHRILNPNPQPLRFDPNELNTHFASTA 644


>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
          Length = 839

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 692 VLACKIRTPVHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           V A ++   +HR +   P  L F P  LNTH  S A
Sbjct: 536 VKAKEVWRVIHRILHPNPQPLRFDPDELNTHFASTA 571


>SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)
          Length = 813

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 692 VLACKIRTPVHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           V A ++   +HR +   P  L F P  LNTH  S A
Sbjct: 510 VKAKEVWRVIHRILHPNPQPLRFDPDELNTHFASTA 545


>SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 692 VLACKIRTPVHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           V A ++   +HR +   P  L F P  LNTH  S A
Sbjct: 246 VKAKEVWRVIHRILHPNPQPLRFDPDELNTHFASTA 281


>SB_49192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 665 VHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           +HR +   P  L F P  LNTH  S A
Sbjct: 99  IHRILHPNPQPLRFDPDELNTHFASTA 125


>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 665 VHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           +HR +   P  L F P  LNTH  S A
Sbjct: 515 IHRILHPNPQPLRFDPDELNTHFASTA 541


>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 692 VLACKIRTPVHRYIRMQPDVLSFRPRRLNTHTTSLA 585
           V A ++   +HR +   P  L F P  LNTH  S A
Sbjct: 649 VKAKEVWRVIHRILHPNPQPLRFDPDELNTHFGSTA 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,368,176
Number of Sequences: 59808
Number of extensions: 394107
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)