Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0012
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    28   6.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   6.7  

>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 705 IRKIGTRLQDSNTGASLHTNATGRLIL*ATTT*YTHYKLSITARIDFTIHATTTKSAFPE 526
           I+ +GT  +  ++ ++LH +  GR +  AT+    H     T ++ F++ A + K A   
Sbjct: 62  IQAVGTECKLDSSVSALHFSPDGRFLAAATSKGIIHLLDVETGKVRFSVKAASEKIAKLH 121

Query: 525 CLCKR 511
             C R
Sbjct: 122 WNCVR 126


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 705 IRKIGTRLQDSNTGASLHTNATGRLIL*ATTT*YTHYKLSITARIDFTIHATTTKSAFPE 526
           I+ +GT  +  ++ ++LH +  GR +  AT+    H     T ++ F++ A + K A   
Sbjct: 62  IQAVGTECKLDSSVSALHFSPDGRFLAAATSKGIIHLLDVETGKVRFSVKAASEKIAKLH 121

Query: 525 CLCKR 511
             C R
Sbjct: 122 WNCVR 126


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 594  CSVCIKSSWP-KG*DVRLHSYVAMHRCSNLAGEYQ 695
            CS CIK  WP K   +  H    + RC+N+   ++
Sbjct: 1671 CSACIKEPWPTKEICIVCHPDTTIFRCTNIVNLHE 1705


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,737
Number of Sequences: 27780
Number of extensions: 309753
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)