Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0011
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    37   0.002
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   6.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   8.0  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   8.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.0  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   8.0  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   8.0  

>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +3

Query: 231 RVERCLSKYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLS 410
           R+   +  Y N   L+    +  D+      V+ D  +F P  G  L G +N    +H+ 
Sbjct: 43  RINGIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIG 102

Query: 411 VLVHRVFNVVIPQPTEEPGDKWI 479
           +L+  +FN  IP+ +  P D WI
Sbjct: 103 LLILGIFNASIPRKS-IPKD-WI 123


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 104 FANCFNSRRSNFMILDI 54
           F NCF +R SN+M+L I
Sbjct: 167 FVNCFKTRLSNWMLLPI 183


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 273 LQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQ 449
           L  +G I  D    +F V A   I     G   +G+++KK    + + +  V NVV+P+
Sbjct: 322 LHQLGYIHRDLKPENFLVGASGHIKLTDFGLS-SGIISKKKIESMKIRLQEVNNVVVPE 379


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 533 LYGALPYIRGELDERSLKLENYEIDDDIEVS 625
           LY       GELDE +LKL   + D D EV+
Sbjct: 515 LYSPSKQPSGELDEENLKLRLQDSDVDDEVA 545


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +1

Query: 55  MSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKE 234
           + ++   ++++   +  + N  LV K+  + + L    L N  ES+T+ ++ ++ KFD +
Sbjct: 110 LCRLANLEMQKELSIEVNMNVTLVQKQFLEMVILH---LRNF-ESVTDKMNQRIDKFDGK 165

Query: 235 LNGVL 249
            N V+
Sbjct: 166 FNSVI 170


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 305 CGYTFPSSSGLLHISTIH 358
           C +TFP+  G +H+S I+
Sbjct: 172 CNFTFPTIQGSIHLSDIN 189


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 527 LDLYGALPYIRGELDERSLKLENY 598
           LDL   LPY  G L+++++ L++Y
Sbjct: 434 LDLRSQLPYSEGWLEDQTILLKSY 457


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 632 MVEKLQYRHQFHSFLVLDSS 573
           +++K + RH FH+F V D S
Sbjct: 280 LLKKYEGRHNFHNFTVTDDS 299


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 64  IIKFDLRELKQLANDKNSCLVVKKITQNLA 153
           I+K D+  +K +A  K+ CL VK   QN++
Sbjct: 317 IMKPDVLFIKSIAVLKSKCLAVKSSLQNIS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,999
Number of Sequences: 5004
Number of extensions: 52828
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)