Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0011
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218     29   3.6  
05_03_0621 - 16291770-16291786,16292847-16293207                       28   8.3  

>04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218
          Length = 384

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 539 GALPYIRGELDERSLKLENYEIDDDIEVSQPLNVPYV 649
           G LP   G +DE S  L NY++  +I +S  L++P V
Sbjct: 30  GDLPLSPGVMDEASRVLGNYDLLKEILLSLGLHIPLV 66


>05_03_0621 - 16291770-16291786,16292847-16293207
          Length = 125

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 282 VGTIRNDNADIHFQVQADYFIFQP 353
           + TIR D+ D H ++ ADYF   P
Sbjct: 58  IKTIRRDHVDAHSRLVADYFAEHP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,123
Number of Sequences: 37544
Number of extensions: 276403
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)