Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0010
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.67 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.67 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.67 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.1  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   6.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   6.3  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 633 VKTGRSIKELEDEMLNGQKLQGPITAEEVNHMLAN 737
           +K+ R+ K+L+D+ +N    +  +    ++H+L N
Sbjct: 187 IKSERNGKDLDDDDMNDDDRKDDLLGNNMHHILGN 221


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 156 QRQSSCSWLYFSKQSRADSSDKLMRHHK 73
           +R S C ++YF    R  ++D+L  H K
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDELSAHSK 695


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 156 QRQSSCSWLYFSKQSRADSSDKLMRHHK 73
           +R S C ++YF    R  ++D+L  H K
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDELSAHSK 695


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 341 ISYRQTTSGSWWWTMRTQSKYVER 412
           +S R++ SG W+W   T  +   R
Sbjct: 20  VSSRKSDSGIWYWQCNTDEETCTR 43


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 156 QRQSSCSWLYFSKQSRADSSDKLMRHHK 73
           +R S C ++YF    R   +D+L  H K
Sbjct: 121 KRWSQCMYMYFLLGFRYLVNDELSAHSK 148


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 156 QRQSSCSWLYFSKQSRADSSDKLMRHHK 73
           +R S C ++YF    R   +D+L  H K
Sbjct: 435 KRWSQCMYMYFLLGFRYLVNDELSAHSK 462


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,137
Number of Sequences: 336
Number of extensions: 3855
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)