Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0010
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   135   8e-33
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   127   2e-30
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    28   1.7  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   3.0  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   6.9  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   9.1  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   9.1  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  135 bits (326), Expect = 8e-33
 Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 6/172 (3%)
 Frame = +1

Query: 10  PSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGW 189
           P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++G I+P A  +S IKG  +++ G 
Sbjct: 94  PPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGAVGISCIKGVAVSKEG- 152

Query: 190 HRSYITYYYKMPKNSLCC--INGSNIASEVAEEKFCETTIGCRDVMLAPLMRD----IIQ 351
            R Y     +  K  + C  ++G+N+A+EVA E+FCETTIG        + R+    +  
Sbjct: 153 VRLYSEVISE--KLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIAAVFD 210

Query: 352 TDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGLME 507
             YF            + GALKN+VA+  GF DGL +G NTKAA++R GL+E
Sbjct: 211 RPYFSVVSVDDVAGVALGGALKNVVAMAVGFADGLEWGGNTKAAIMRRGLLE 262



 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 41/83 (49%), Positives = 56/83 (67%)
 Frame = +3

Query: 513 KFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKL 692
           KF   F+     +   +SCG+ADL+T+C GGRN R AEAFVKTG+S++ LE E+L GQ L
Sbjct: 265 KFATTFFDSDPRTMVEQSCGIADLVTSCLGGRNNRCAEAFVKTGKSLETLEKELLGGQLL 324

Query: 693 QGPITAEEVNHMLANKNMENKFP 761
           QG  T+++V+  L  K+M   FP
Sbjct: 325 QGAATSKDVHEFLLTKDMVKDFP 347


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  127 bits (307), Expect = 2e-30
 Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
 Frame = +1

Query: 4   KLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEG 183
           K PSNV A PD+ +    +D+L++V+PHQFV  IC+ L G +K  A A+S IKG  + + 
Sbjct: 94  KCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIKGVSVTKD 153

Query: 184 GWHRSYITYYYKMPKNSLCCINGSNIASEVAEEKFCETTIG-CRDVMLAP-----LMRDI 345
              R +     +        ++G+NIASEVA+EKFCETTIG   +  + P      ++ +
Sbjct: 154 R-VRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIGYLPNSSVNPRYTPKTIQAL 212

Query: 346 IQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGLME 507
               YFR           + GALKNIVAV AG +DGL  GDNTK+AV+R+GL+E
Sbjct: 213 FNRPYFRVNIVEDVPGVALGGALKNIVAVAAGIIDGLELGDNTKSAVMRIGLLE 266



 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 44/83 (53%), Positives = 58/83 (69%)
 Frame = +3

Query: 513 KFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVAEAFVKTGRSIKELEDEMLNGQKL 692
           KF  +F+    L+   ESCG+ADLITTC GGRN + A AFVKTG+ +  +E E+L+GQKL
Sbjct: 269 KFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKPMHVVEQELLDGQKL 328

Query: 693 QGPITAEEVNHMLANKNMENKFP 761
           QG  TA+EV   L N+N  ++FP
Sbjct: 329 QGAATAKEVYEFLDNQNKVSEFP 351


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -3

Query: 327 SQHYVPTTNGRFAEFFLSNLRCNIAPINTAQGIFRHLVIICDIRSMPATFGYIKSLNQRQ 148
           SQHY        A+F L+ +  N A + +    F     + D+ S+P T   +   + ++
Sbjct: 102 SQHYFEDYKSNSADFMLTFI--NFALVASGCQPFVTNFDVQDVDSIPETLSQVNRSSFQK 159

Query: 147 SSCS---WLYFSKQSRA 106
           SSC+   +LY S    A
Sbjct: 160 SSCAYTDYLYTSNSKEA 176


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 88  QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 180
           + +R IC T+ G ++ +   + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 353 VCMISRINGASITSRQPMVVSQNFSSATSDAILLPL 246
           V   S++   S TS+   +VS+N  SATS +I +P+
Sbjct: 175 VSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 299 VVSQNFSSATSDAILLPLIQHREFLG 222
           V      S +SD I LP++   EFLG
Sbjct: 215 VSEDTIGSLSSDTIQLPMVSMEEFLG 240


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 258 IAPINTAQGIF---RHLVIICDIRSMPATFGYIKSLNQRQSSCSWLYFSK 118
           IA +  +  IF    H  I+  +  + ++  Y   LN R + C WL FS+
Sbjct: 300 IAKLQNSTNIFYVPEHEPILAFVHQLSSS--YTNLLNLRSAICDWLKFSR 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,282
Number of Sequences: 5004
Number of extensions: 63222
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)