Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0010
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 97 1e-20
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 63 3e-10
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 45 8e-05
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 44 1e-04
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 38 0.007
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453... 33 0.19
02_05_0192 + 26602247-26602617,26602701-26603016 31 1.3
10_01_0119 - 1477261-1478178 29 5.4
07_01_0960 - 8065206-8066132,8066231-8066659 29 5.4
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 28 7.2
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 28 9.5
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 97.5 bits (232), Expect = 1e-20
Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Frame = +3
Query: 516 FVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVAEAFVKTG--RSIKELEDEMLNGQK 689
F + P + +TFFESCGVADLITTC GGRNRRVAEAF + G RS ELE EML+GQK
Sbjct: 212 FSKLLSPTVRDNTFFESCGVADLITTCLGGRNRRVAEAFARNGGKRSFDELEAEMLHGQK 271
Query: 690 LQGPITAEEVNHMLANKNMENKFP 761
LQG TA+EV +L + + FP
Sbjct: 272 LQGVSTAKEVYEVLTYRGWQELFP 295
Score = 74.1 bits (174), Expect = 1e-13
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +1
Query: 4 KLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEG 183
KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P +SLIKG +IA
Sbjct: 73 KLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGISLIKGMEIAVE 132
Query: 184 GWHRSYITY 210
+ + I Y
Sbjct: 133 KFSEATIGY 141
Score = 72.5 bits (170), Expect = 3e-13
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 268 EVAEEKFCETTIGCR-DVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGF 444
E+A EKF E TIG + D +A + T YF +CG LKN+VA+ AG
Sbjct: 128 EIAVEKFSEATIGYKKDKEVATRWAKLFTTPYFLVSVVEDIEGVELCGTLKNVVAIAAGL 187
Query: 445 VDGLGYGDNTKAAVIRLGLME 507
VDGL G+NTKAA++R+GL E
Sbjct: 188 VDGLDMGNNTKAAIMRIGLRE 208
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 62.9 bits (146), Expect = 3e-10
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 12/181 (6%)
Frame = +1
Query: 1 HKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAE 180
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 161 HRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLELNT 220
Query: 181 GGWHRSYITYYYKMPKNSLCCINGSNIASEVAEEK------------FCETTIGCRDVML 324
I P+ ++G + A E+ + + +D L
Sbjct: 221 LRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNKLPTGRNLIVIKLYMAAMVVASKDKKL 280
Query: 325 APLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGLM 504
A ++ ++ + R I GALKN++A+ AG V+G+ G+N AA++ G
Sbjct: 281 AAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGMHLGNNCMAALVAQGCS 340
Query: 505 E 507
E
Sbjct: 341 E 341
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 44.8 bits (101), Expect = 8e-05
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 8/161 (4%)
Frame = +1
Query: 28 VPDVVEAAKDADLLIFVVPHQFVRTICSTL--LGKIKPTAAA-LSLIKGFDIAEGGWHR- 195
V ++ EA DAD++I +P R + + K + TA LSL KG + + R
Sbjct: 148 VTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRI 207
Query: 196 ----SYITYYYKMPKNSLCCINGSNIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYF 363
I+ +P ++ + G NIASE+ +++ I D PL + ++ +F
Sbjct: 208 ITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPHF 266
Query: 364 RXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAV 486
+ G LKN+ A+GAG V L T +V
Sbjct: 267 IVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSV 307
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 44.0 bits (99), Expect = 1e-04
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Frame = +1
Query: 28 VPDVVEAAKDADLLIFVVPHQFVRTICSTL----LGKIKPTAAALSLIKGFDIAEGGWHR 195
V ++ EA DAD++I +P R + + +I+P +SL KG + + R
Sbjct: 145 VTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVI-ISLAKGIEASIDPVPR 203
Query: 196 -----SYITYYYKMPKNSLCCINGSNIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDY 360
I+ +P ++ + G NIASE+ +++ I D PL + ++ +
Sbjct: 204 IITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPH 262
Query: 361 FRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAV 486
F + G LKNI A+GAG V L T +V
Sbjct: 263 FIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSV 304
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +1
Query: 220 MPKNSLCCINGSNIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXX 399
+P ++ + G NIASE+ +++ I + PL + ++ +F
Sbjct: 229 VPTENILYLGGPNIASEIYNKEYANARICGSNKWRKPLAK-FLRQPHFIVWDNSDLVTHE 287
Query: 400 ICGALKNIVAVGAGFVDGLGYGDNTKAAV 486
+ G LKN+ A+GAG V L T +V
Sbjct: 288 VMGGLKNVYAIGAGMVAALTNESATSKSV 316
>12_01_0560 -
4532398-4532724,4532975-4533235,4533670-4533855,
4533922-4533936,4533941-4534246,4535032-4535135,
4535669-4535801
Length = 443
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 288 EFFLSNLRCNIAPINTAQGIFRHLVIICDIRSMPATFGYIKSLNQ 154
EFF+ NL + A+G+FR+ V C+ + +P G++ LN+
Sbjct: 70 EFFV-NLLLGLWEDRMARGLFRYDVTACETKVIPGNLGFVAQLNE 113
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 266 RRLLRKNSAKRPLVVGT*CWL--R*CGI-SYRQTTSGSWWWTMRTQSKYVE 409
RRL + R G CW R CG S+R+ +WWW Q ++ E
Sbjct: 46 RRLSAGSGCGRWWSAGDACWRQRRRCGRGSWRRRLLAAWWWRATAQRRFAE 96
>10_01_0119 - 1477261-1478178
Length = 305
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 16 NVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTL-LGKIKPTAAALSLIKGFDIAEGGWH 192
N+V V DVVE A D+ I V RT+ L + P A S+++ A G H
Sbjct: 89 NIVVVRDVVEDASTGDMFI-VTDFVGGRTLRLDLWMAHPDPEERARSVMRDLVAAAGALH 147
Query: 193 RSYITYYYKMPKNSLCCINGSNI 261
+ + + P N L +NG +
Sbjct: 148 AAGVMHRDIKPDNIL-VVNGGGL 169
>07_01_0960 - 8065206-8066132,8066231-8066659
Length = 451
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 25 AVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGWHR 195
++ DVVE ++A V ++VR++ TL+ + +P +L+ D+ G+HR
Sbjct: 325 SLADVVEQVREAKK---TVNAEYVRSVADTLVMRGRPAIDTANLLLLSDVRLAGFHR 378
>09_02_0071 -
3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 431 WVRVSWMASATVITQRLLSSDSVSWRDQIR*CVLPG 538
+V++ + A+VI +++ SD VSW I CVL G
Sbjct: 247 YVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282
>12_02_0692 -
22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +2
Query: 212 ITRCLKIPCAVLMGAILHRRLLRKNSAKRPLVVGT*CWLR*CGISYRQTTSGSWWWTMRT 391
+ C+K CA L G + L +S + + + WLR C T WW +
Sbjct: 571 VAPCIKKICASL-GKKKKLKPLLASSLQNIITISESLWLRGCKPIEMWTAPAGAWWLLSE 629
Query: 392 QSKYVER*RTLWQWVRVSW 448
S + + W+++ W
Sbjct: 630 VSSFAPK-SVNWKFLSHHW 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,946,522
Number of Sequences: 37544
Number of extensions: 442678
Number of successful extensions: 1214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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