Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0009
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 804 QANKFKNASDALMSSYLRAGNGLTASLVHKYIDS 703
           Q N+F N +  L+   L+A    T SLV   ID+
Sbjct: 205 QMNRFINENSELLFKELQAAYEETFSLVFTKIDN 238


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 701 LIFMWKHWPPKRVS*KLH 648
           L+F+WK   P +V   LH
Sbjct: 188 LVFLWKEGDPVQVVKNLH 205


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 701 LIFMWKHWPPKRVS*KLH 648
           L+F+WK   P +V   LH
Sbjct: 188 LVFLWKEGDPVQVVKNLH 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,930
Number of Sequences: 438
Number of extensions: 2281
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)