Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0008
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|c...    26   5.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   7.2  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   9.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.5  

>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 53  FTNQGGWLVELLEKKDGNIAAVL 121
           F N G WL EL E  D NI  +L
Sbjct: 98  FDNVGRWLKELREHADSNIVIML 120


>SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 492 VCLLGQNIKLVHLDKSAKCRINFNYTNKKTFTQKKSANSTLKLE 623
           + L G ++ + H+D S    +  +YT  K    KK+    + +E
Sbjct: 140 IALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGDLVNVE 183


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 489  LVCLLGQNIK-LVHLDKSAKCRINFNYTNKKTFTQKKSANSTLKLEFRVL 635
            +  LLGQ +K L  L+K  K         KK    KKS +S +  +FR L
Sbjct: 1242 IATLLGQRLKQLYKLEKDIK-----RMATKKKMITKKSMSSDMMTQFRAL 1286


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = -2

Query: 429 RCLISIFFITHYYMNI----NHISTINEKTIIVIVKQKSNATV----KLFFT*NNLDMIM 274
           RC I    IT  + NI    N IS I     + + + K+   V     LFF+   +D  +
Sbjct: 232 RCTIPKRVITSMHNNIAELYNPISCIKSLPYLSLEEAKTTLEVHTDRSLFFSGQIIDFTI 291

Query: 273 CYIHS 259
           CY H+
Sbjct: 292 CYTHN 296


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 429  RCLISIFFITHYYMNINHISTINEKTIIVIVKQKSNATVKLF 304
            RCL S         N+  +  +NE  + +++   S+ T+KL+
Sbjct: 1023 RCLNSFKTSASATTNVTDMQLLNEDDVALLMTGSSDGTIKLY 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,114
Number of Sequences: 5004
Number of extensions: 51865
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)