Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0007
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    31   0.26 
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   4.3  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    26   5.7  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.7  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.9  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.9  

>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 355 SLKTRNILKVVDLDRLKPEKNQQANGLTGVIHQGNNGVMPQGTVPTASFSEDI*NRNSYT 534
           +L  R+    +DL R +    ++A G   ++    NG +PQ  +P     EDI   ++ T
Sbjct: 189 NLDARSFKSDMDLKRSQ-NMRRRATGYPAIVVPFLNGSLPQADLPPLRTIEDI---DNLT 244

Query: 535 RAQCFT 552
           R QC T
Sbjct: 245 REQCLT 250


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 659 CPFFGFFMRINGPCLFFPFW 600
           C + G F+ INGPC  +  W
Sbjct: 239 CMYRGNFVTINGPCTTYMHW 258


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 564 LSSNREALCSRITVP-VSNILGKAGCWHCSLRHYSV 460
           L ++++ + S I  P V N L  AGCW  SL HY +
Sbjct: 8   LKNSKDGISSVIFSPSVKNEL-IAGCWDGSLLHYQI 42


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 597 RSTTDPVLGRTLSSNREALCSRITVPVSNILGKAGCWHCSLRHYSVVSLVN 445
           +S TD  L R    N+ +LC      V      +GCW   +   +V+ +++
Sbjct: 40  KSFTDGFLLRRAVLNQTSLCENPPADVREWKNSSGCWAPKIFERAVIVIID 90


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 77   HCSFKFDSFFTKTESHRTLVLKDLHTFIVLRPTLGTVSCLGA*RVNISL 223
            H + KFD +  +   +  LVL D+   I  +  +G V   GA +  ++L
Sbjct: 1221 HGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTL 1269


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 406 PEKNQQANGLTGVIHQGNNGVMPQGTVPTAS 498
           P    Q   +TG    G NG  P  T PT S
Sbjct: 519 PNPTNQKVSITGAAADGPNGSAPVDTTPTNS 549


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 407 GFKRSRSTTFKMFRVLRLVCEKTMSFG 327
           GF  S  TTFK+F +L  +C + +  G
Sbjct: 83  GFPASPETTFKVFSLLDSLCLRLIQSG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,642
Number of Sequences: 5004
Number of extensions: 72881
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)