Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0007
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1216 - 25344638-25345159,25346011-25346511                       31   0.85 
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    30   2.6  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    29   6.0  
11_05_0044 + 18570501-18570654,18571384-18572435                       29   6.0  
07_03_0501 - 18820554-18821548,18821960-18822182                       29   6.0  
02_04_0545 + 23778769-23779245,23779395-23779688                       28   7.9  

>08_02_1216 - 25344638-25345159,25346011-25346511
          Length = 340

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 547 FTVRTQSSSKNWISCAPIQKGKNKHGPLILIKKPKNGHVPSTHRTHH 687
           F    +S+ + W+ C    K  +++  L+++K P + ++P +H  HH
Sbjct: 159 FAAARRSTKEEWVICRIFHKVGDQYSKLMMMKSPASYYLPVSH--HH 203


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 586 SCAPIQKGKNKHGPLILIKKPKNG---HVPSTHRTHHSAYKGG 705
           +C+ +   ++       + KP NG   H P  H  HHSA  GG
Sbjct: 300 ACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGG 342


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/75 (26%), Positives = 28/75 (37%)
 Frame = +3

Query: 501 FRGYLKPEQLYASTMLHGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPH 680
           +R   +  Q+  +  +      F QE  QL     R+ +   IDS     + A    TP 
Sbjct: 65  YRQNTRRRQISRTASIDFLEDAFLQEFSQLIDLARRQGRETDIDSSSVAPQHASFNSTPS 124

Query: 681 TSFCLQGWDVQDDNS 725
            S   Q W   DD S
Sbjct: 125 QS---QRWHASDDES 136


>11_05_0044 + 18570501-18570654,18571384-18572435
          Length = 401

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 227 AQEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTWFF 346
           AQEEF  +Y      DHLP+ + + +    +S  +K  F+
Sbjct: 24  AQEEFVDWYFRVTQSDHLPDLKAKMKRMCDKSAIKKRHFY 63


>07_03_0501 - 18820554-18821548,18821960-18822182
          Length = 405

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 230 QEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTWFF 346
           Q+E+  FY      +HLPE + + R   ++S  +K + F
Sbjct: 48  QDEYADFYFRVTKSEHLPELKNKLRRICNKSGIEKRFMF 86


>02_04_0545 + 23778769-23779245,23779395-23779688
          Length = 256

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 636 HKETEKRACSFDTPHTSFCLQGWDVQDDNSP 728
           H +      + DTP   F  QGW +Q ++SP
Sbjct: 136 HHQQPAPTVAVDTPSPQFLPQGWALQKESSP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,284,486
Number of Sequences: 37544
Number of extensions: 441680
Number of successful extensions: 1297
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)