BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0007 (827 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.21 SB_867| Best HMM Match : Leo1 (HMM E-Value=0) 33 0.28 SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6 SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 29 4.6 SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7) 29 6.1 SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1 >SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 921 Score = 33.5 bits (73), Expect = 0.21 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Frame = +1 Query: 481 TVPTASFSEDI*NRNSYTRAQCFTVRTQSSSKNWISCAPIQK--GKNKHGPLIL---IKK 645 ++PT S +RNS TR Q + R QSSS S ++ GK H LI IK+ Sbjct: 817 SLPTRDQSSSTRDRNSSTRDQSSSTRDQSSSTRDQSSITTEQSSGKVNHAKLITDVKIKQ 876 Query: 646 PKNGHVPSTHRTHHSAYKGGMYRTITLPTARQAF 747 + + HS + ++ L T R+AF Sbjct: 877 EPEERIEQSADIVHSPNQIAACKSCVLTTERRAF 910 >SB_867| Best HMM Match : Leo1 (HMM E-Value=0) Length = 591 Score = 33.1 bits (72), Expect = 0.28 Identities = 13/34 (38%), Positives = 24/34 (70%) Frame = +3 Query: 555 SNSEFFQELDQLCSDPEREEQTRTIDSHKETEKR 656 S+++ F E ++L SD E+E+ R ++S +ET+ R Sbjct: 265 SHADLFGEDEELSSDEEKEDNAREVESKEETQAR 298 >SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1512 Score = 29.9 bits (64), Expect = 2.6 Identities = 24/103 (23%), Positives = 43/103 (41%) Frame = +3 Query: 237 SSINSIKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 416 S NS++ ++ T P RS + ++ P+T D + FES R Sbjct: 1057 SGSNSVEAPRKRATLPRRSSPVISRKPRPDT-----LMRSKSDFERFESHRVTEDSRTSS 1111 Query: 417 PTGERSNRSDSPRKQXXXXXXXXXXXQLFRGYLKPEQLYASTM 545 P E S R +SPR+ ++ R +K ++ + S++ Sbjct: 1112 PDAEYSPR-ESPRESLQQRTPRRSHSEVSRLPVKADRQHYSSL 1153 >SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1066 Score = 29.5 bits (63), Expect = 3.5 Identities = 10/41 (24%), Positives = 25/41 (60%) Frame = +2 Query: 218 SLGAQEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTW 340 ++ AQ EF + ++ ++ + +S +RY+ ++ ++KH W Sbjct: 308 AMEAQAEFTKLLEDAIIENDIAQSVQRYQLAVQEAKHDCRW 348 >SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) Length = 446 Score = 29.1 bits (62), Expect = 4.6 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +3 Query: 285 SRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKAR------KEPTGERSNRSD 446 S++DDI N ++++ F N+ DS++ + SF A K PT S S Sbjct: 85 SQNDDISENNDNDDSQKDDDFPNDDDDSRNSDVDSRNSFDASRSEDACKNPTKVSSQDSR 144 Query: 447 SP 452 SP Sbjct: 145 SP 146 >SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7) Length = 373 Score = 28.7 bits (61), Expect = 6.1 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = -1 Query: 443 TPVRPFACWFFSGFKRSRSTTFKMFRVLR 357 TP P CW ++ K +R TT ++ ++ + Sbjct: 129 TPTGPHCCWHYTSTKTTRETTTRLVQMCK 157 >SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 398 Score = 28.7 bits (61), Expect = 6.1 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 531 YASTMLHGSNSEFFQELDQLCSDPEREEQTR---TIDSHKETEKRA 659 + TM S SE QEL +L DPE +E T +ID+ K + A Sbjct: 54 HVKTMAEESMSEASQELKELKGDPESQEPTNCAISIDTGKVLDVEA 99 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,531,145 Number of Sequences: 59808 Number of extensions: 549170 Number of successful extensions: 2487 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2486 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2323539746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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