Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0007
(827 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 32 0.40
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 31 0.71
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam... 31 0.71
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ... 30 1.6
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 29 3.8
At2g24370.1 68415.m02912 protein kinase family protein contains ... 29 3.8
At4g31110.1 68417.m04415 wall-associated kinase, putative simila... 29 5.0
At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P460... 28 6.6
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 28 8.7
At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3 (... 28 8.7
At3g44310.2 68416.m04759 nitrilase 1 (NIT1) identical to SP|P329... 28 8.7
At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P329... 28 8.7
At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P329... 28 8.7
At3g17790.1 68416.m02269 acid phosphatase type 5 (ACP5) contains... 28 8.7
At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase fam... 28 8.7
At1g79200.1 68414.m09234 expressed protein 28 8.7
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 28 8.7
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 285 SRSDDIGTQ-YTNPNTKRHGFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 458
SR D++ + NP++ ++E + K E SRP K R+EP+ E S RS RK
Sbjct: 197 SRKDEVKLESLQNPSSNHDDRVSSEKGNFK--EKSRPGGNKERQEPSVEGSTRSGENRK 253
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 198 PKQLTVPRVGLSTMNVCKSFKTRVRCDSVFVKKESNLNEQCLRR 67
P Q T+P + +C SF +++ + KE N QC+RR
Sbjct: 617 PVQTTLPPLSRRPSRLCASFDDQIKDLEIEASKEQNEINQCMRR 660
>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam
profile: PF01370 NAD dependent epimerase/dehydratase
family
Length = 460
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 634 LIKKPKNGHVPSTHRTHHSAYKGGMYRTIT 723
LIK P+NG VP TH AYK Y+ T
Sbjct: 397 LIKMPRNGDVPYTHANVSLAYKDFGYKPTT 426
>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
identical to DNA repair and meiosis protein (Mre11)
GI:5524769 from [Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 319 IQTPKD-MVFSQTSLKTRNILKVVDLDRLKPEKNQQAN 429
+ P+D ++FS+ S K R+ + D +RL+PE+ Q N
Sbjct: 388 VANPQDILIFSKASKKGRSEANIDDSERLRPEELNQQN 425
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 633 SHKETEKRACSFDTPHTSF-CLQG 701
S ++ E CSFD PHT F LQG
Sbjct: 546 SRRDEENNRCSFDFPHTHFGVLQG 569
>At2g24370.1 68415.m02912 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 816
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 513 LKPEQLYASTMLHGSNSEFFQELDQLCSDPE 605
L+P L S LH S+++ Q+ +C DPE
Sbjct: 55 LRPSPLNNSASLHASSAKLSQDSSLVCRDPE 85
>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
to wall-associated kinase 1, Arabidopsis thaliana,
gb:AJ009696
Length = 756
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 564 EFFQELDQLCSDPEREEQTRTIDSHKETEK 653
E F EL+++C+ PE + ID +E E+
Sbjct: 683 EVFTELERICTSPEDSQVHNRIDEEEEEEE 712
>At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P46010
Nitrilase 3 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 346
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 714 PVHPTLVGRMMCAVCRRN-MPVFR-FLYENQWSVFVLPFLDRS 592
PV+ T +G++ A+C N MP++R LY ++ P D S
Sbjct: 172 PVYDTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTADYS 214
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 498 LFRGYLKPEQLYASTMLHGSNSEFFQELDQLCSDPEREE 614
+FR YL+PE+ Y S L N + + LD +C D E
Sbjct: 1033 VFRRYLRPEKDYLSFSLIYHNGD--RSLDLICKDKAETE 1069
>At4g11840.1 68417.m01885 phospholipase D gamma 3 / PLD gamma 3
(PLDGAMMA3) identical to phospholipase D gamma 3
sp:Q9T052 from [Arabidopsis thaliana]
Length = 866
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -3
Query: 708 HPTLVGRMMCAVCRRNMPVFRFLYENQWSVFVLPFLDRSTTDPVLGRTL---SSNREALC 538
H TLVG M + RRN V EN + P++ S + V+GRT +S
Sbjct: 65 HNTLVGGMFFGLGRRNHKVDG---ENSSKITSDPYVTVSISGAVIGRTFVISNSENPVWM 121
Query: 537 SRITVPVSNILGK 499
VPV++ K
Sbjct: 122 QHFDVPVAHSAAK 134
>At3g44310.2 68416.m04759 nitrilase 1 (NIT1) identical to SP|P32961
Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 224
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 714 PVHPTLVGRMMCAVCRRN-MPVFR-FLYENQWSVFVLPFLDRS 592
PV+ T +G++ A+C N MP++R LY ++ P D S
Sbjct: 50 PVYDTPIGKLGAAICWENRMPLYRTALYAKGIELYCAPTADGS 92
>At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P32961
Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 346
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 714 PVHPTLVGRMMCAVCRRN-MPVFR-FLYENQWSVFVLPFLDRS 592
PV+ T +G++ A+C N MP++R LY ++ P D S
Sbjct: 172 PVYDTPIGKLGAAICWENRMPLYRTALYAKGIELYCAPTADGS 214
>At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P32962
Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
Length = 339
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 714 PVHPTLVGRMMCAVCRRN-MPVFR-FLYENQWSVFVLPFLDRS 592
PV+ T +G++ A+C N MP++R LY ++ P D S
Sbjct: 165 PVYDTPIGKLGAAICWENRMPLYRTALYAKGIELYCAPTADGS 207
>At3g17790.1 68416.m02269 acid phosphatase type 5 (ACP5) contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
nearly identical to acid phosphatase type 5
(GI:10278031) [Arabidopsis thaliana]
Length = 338
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 242 NQFYKNGCSKDHLPESERRYRNSIHQSKHQKTWF 343
+ FY NG +H P E+ + N QK W+
Sbjct: 86 DNFYDNGLFSEHDPNFEQSFSNIYTAPSLQKQWY 119
>At2g45310.1 68415.m05639 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 437
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 634 LIKKPKNGHVPSTHRTHHSAYKGGMYR-TITLPTARQAFI 750
LIK P+NG VP TH A + Y+ T L T + F+
Sbjct: 382 LIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFV 421
>At1g79200.1 68414.m09234 expressed protein
Length = 159
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 285 SRSDDIGTQYTNPNTKRH-GFFANESQDSKHFESSRPRSFKARKEPTGERSNRSDSPRKQ 461
+RS+D + KRH G ++ + S+ + +S K K T ++S + D P+K+
Sbjct: 15 ARSEDSSSSDYEEKVKRHRGTEKDDERRSRRSDKKDKKSHKHHKSSTSKKS-KDDKPKKK 73
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 634 LIKKPKNGHVPSTHRTHHSAYKGGMYRTIT-LPTARQAFI 750
++K P+NG VP TH SA + Y+ T L T + F+
Sbjct: 377 MMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFV 416
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,486
Number of Sequences: 28952
Number of extensions: 378537
Number of successful extensions: 1179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -