Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0005
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    30   0.40 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    29   0.70 
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   6.5  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.6  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +1

Query: 412  DFETALQILSCHRRVTFLKYKHMQTKFSGNYPSTRSCYPRES*LDP 549
            DFE+A++IL+  ++V  + +  ++T+F   Y ++R   P  S LDP
Sbjct: 924  DFESAMKILN--KQVGAINFSPLKTRFLEIYTASRVYLPTISGLDP 967


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 370 RIKETNIKRT--SKIENAREV*RHLLSNSGNTYLKH-WSCRDVLDNCIIEMLYRL*KLCR 200
           R+K  N +    SKIENA+ V + LL      Y+K  +S +  +++ +I    R  KLC 
Sbjct: 214 RLKAENAESDMHSKIENAQNVQKQLLCIHRPNYIKQFFSLQREIESSLIANYLRYTKLCE 273

Query: 199 VDT 191
            +T
Sbjct: 274 SNT 276


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 385 NAISRRIKETNIKRTSKIENAREV*RHLLSNSGNTYLKHWS 263
           +AIS +I++T  K +  +E+AR+  +    +   +  + WS
Sbjct: 92  DAISNKIRKTGRKLSGSVEDARDATQEAWESQKASLFESWS 132


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 670 VPRFSFNPAVHSRRDFSRQAERECVPVLISHKRSCYSPE*KDLVSSHEDSKSEYSGSYLK 491
           V  +S+N +V S    +R +    VP+  S  +   S E KDL S    ++S+   SY++
Sbjct: 342 VKEYSWNTSVLSDEALTRNSLTLPVPIKPSINKDISSIEVKDL-SQKNTTQSKKLNSYIR 400

Query: 490 TLF 482
             F
Sbjct: 401 DSF 403


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 406 TIDFETALQILSCHR-RVTFLKYKHMQTKFSGNYP 507
           T+  ET LQ++      ++FL Y H  +    NYP
Sbjct: 255 TLKRETGLQVICIKLGNLSFLNYDHSSSPGKSNYP 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,839
Number of Sequences: 5004
Number of extensions: 52052
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)