Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0004
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    29   0.54 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    29   0.72 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.1  

>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 608 FARSIIDYNIFKNVHFNVRYIQE 676
           F+  +I YN+FK   FNV+++ E
Sbjct: 31  FSELLIPYNVFKKAGFNVQFVSE 53


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 501 LQLEYAII-HLNKYFFIVKRMSVNYIFKHYTVLRHFIRFFFNTYKISLKRRINVLK 337
           L+L  A + HLN YF      SVN  F+   +L H +   +  Y   L ++ NV K
Sbjct: 72  LELRVAHVEHLNPYFHAEAFASVNDCFERSLILLHKMPVIWKLYLQFLMKQPNVTK 127


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 477 HLNKYFFIVKRMSVNYIFKHYTVLRHFIRFFFNTY--KISLKRR 352
           HLN Y+F ++  S+N +   + V++ F+ + F       +LKRR
Sbjct: 263 HLNSYYFSLRTRSLNNVL--FWVIQFFVPYLFTLILDAKALKRR 304


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 233 LLYFKGNFLWYIQVNKYFDI 174
           +L+F   +LWYI VN  F +
Sbjct: 721 VLFFLDTYLWYILVNTVFSV 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,602
Number of Sequences: 5004
Number of extensions: 56044
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)