Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0004
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_11969| Best HMM Match : Papilloma_E5 (HMM E-Value=4.6)              29   3.1  

>SB_13697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/53 (22%), Positives = 29/53 (54%)
 Frame = -1

Query: 513 YVYRLQLEYAIIHLNKYFFIVKRMSVNYIFKHYTVLRHFIRFFFNTYKISLKR 355
           YVY  ++  + +HL+++  +   M++  +F  ++V +  + +F   Y  S K+
Sbjct: 259 YVYLFEMFMSTLHLDRWNILCSSMTLERLFGKFSVEKEILGWFVLAYHHSSKK 311


>SB_11969| Best HMM Match : Papilloma_E5 (HMM E-Value=4.6)
          Length = 190

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 219 FEVQQALLRYLLRQFLCILLI*TYTIVTSYPVWL*YLINILIHLFFASNLSY 374
           F V Q L+R LL    C+LL+ TY I      W+  L+ +    + A  L Y
Sbjct: 17  FSVLQMLVRCLLEMVPCVLLLATYLIGILAAAWITALL-VPFPYYIALRLEY 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,514,323
Number of Sequences: 59808
Number of extensions: 369944
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)