Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0004
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    29   4.7  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    28   6.3  
U58754-3|AAX22293.1|  318|Caenorhabditis elegans Serpentine rece...    28   6.3  
Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical p...    28   8.3  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
           protein Y67D8C.9 protein.
          Length = 1073

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 458 KKYLLRCIIAYSSCKR*T*LQQYQRSPNYFT 550
           K Y +RC    SSCK     Q++ RSP+ +T
Sbjct: 864 KLYQMRCAAGLSSCKNDYYTQRWSRSPDEWT 894


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 444 MSVNYIFKHYTVLRHFIRFFFNTYKISLK 358
           +S+  ++    +LRHF+++F+ +YK  LK
Sbjct: 78  ISIGSVYTSVFLLRHFLKYFYFSYKGYLK 106


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 444 MSVNYIFKHYTVLRHFIRFFFNTYKISLK 358
           +S+  ++    +LRHF+++F+ +YK  LK
Sbjct: 78  ISIGSVYTSVFLLRHFLKYFYFSYKGYLK 106


>U58754-3|AAX22293.1|  318|Caenorhabditis elegans Serpentine
           receptor, class sx protein16 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 589 LFNI*NAIAVRYQCKIIRASLILL*LCLSFTTRIC 485
           LF   N IAV  + K++R++  L+ LCL+F   +C
Sbjct: 26  LFGNINLIAVILRNKVLRSNFGLIMLCLAFFHTVC 60


>Z81549-11|CAB04470.1|  335|Caenorhabditis elegans Hypothetical
           protein F55C9.13 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 486 HILVVNDRHNYNSIKEALIILH*YRTAMAFYMLN 587
           H+L+ ND H++ SI +AL  ++  RT++  +  N
Sbjct: 97  HLLISNDNHDWKSIHKALDGVNCSRTSLEVHSQN 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,113
Number of Sequences: 27780
Number of extensions: 302559
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)