Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0002
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   1.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   4.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   4.1  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   4.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   9.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.4  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 553 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEG 732
           N+N LA+   + + ++++P+  P+  PD   +++   + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 733 TLLK 744
           TLLK
Sbjct: 385 TLLK 388


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 78  PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 242
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 272 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT-TQGLDDL 448
           NI GV+    +  ++  + + L +L EK G    I          GSE   + T+   D+
Sbjct: 357 NIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSSITEKTRDI 407

Query: 449 AQRCAQYKKDGCHFAKW 499
           A+  A + K+G +F+ W
Sbjct: 408 AKNVATWLKNGENFSSW 424


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 709 DHHVYLEGTLLKPNMVTAVSRARRRTLP 792
           +HHV+LEG  L P++V  +++    TLP
Sbjct: 17  EHHVHLEG-CLSPDLVFRLAKKNGITLP 43


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
 Frame = +2

Query: 215  GEPSSLSPTAIQLYAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGI--IPGIKVDK 388
            G    L    +QLY  +SE  +G+IL  +T   K+     L S L   GI  I  +   K
Sbjct: 2148 GNNQYLKLKIMQLYQ-MSEAYNGIILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISPK 2206

Query: 389  GVVP--LFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCV 508
             +    LFGS +  T +  D +  +  +  +D C++ ++  V
Sbjct: 2207 ALTKESLFGSMNMDTREWTDGVFTKLLRKTRDSCYYKRYMFV 2248


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 618 LDNWHDALALTDGGVAGENIGVFLDSLVRGGV 523
           L NW +   L + G+   N+G F  S+VRG +
Sbjct: 585 LGNWTNIEYLPNSGINPSNVGTF--SMVRGAI 614


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 347 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 454
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 711  PPRVPRGDTPQAQHG-DGRQSCKKTYTP 791
            PP++ +  TP  QHG D  ++  K Y P
Sbjct: 979  PPQLHKTGTPSHQHGFDTAETTAKQYAP 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,682
Number of Sequences: 5004
Number of extensions: 73835
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)