Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0002
(793 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 134 6e-32
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 134 6e-32
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 33 0.27
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 33 0.27
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.27
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 31 1.4
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 4.3
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 5.7
SB_37929| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 28 7.5
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 28 7.5
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 10.0
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 28 10.0
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 10.0
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 28 10.0
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 10.0
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 28 10.0
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 134 bits (325), Expect = 6e-32
Identities = 64/91 (70%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
Frame = +2
Query: 263 LSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQGL 439
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQGL
Sbjct: 67 MSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQGL 126
Query: 440 DDLAQRCAQYKKDGCHFAKWRCV*RLAATPP 532
D L +RCAQYKKDGC FAKWRCV ++ P
Sbjct: 127 DGLGERCAQYKKDGCDFAKWRCVLKITDYTP 157
Score = 133 bits (321), Expect = 2e-31
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +1
Query: 508 VKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLA 687
+KI TPS A++ENANVLARYASICQ +VPIVEPEVL DG+H L+RAQKVTE VL+
Sbjct: 150 LKITDYTPSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQKVTEAVLS 209
Query: 688 AVYKALNDHHVYLEGTLLKPNMVTA 762
A YKAL DHH+YLEGTLLKPNMVTA
Sbjct: 210 ATYKALMDHHIYLEGTLLKPNMVTA 234
Score = 98.7 bits (235), Expect = 5e-21
Identities = 48/58 (82%), Positives = 53/58 (91%)
Frame = +3
Query: 81 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 254
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTS 63
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 134 bits (325), Expect = 6e-32
Identities = 64/91 (70%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
Frame = +2
Query: 263 LSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DECTTQGL 439
+S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E TTQGL
Sbjct: 67 MSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGETTTQGL 126
Query: 440 DDLAQRCAQYKKDGCHFAKWRCV*RLAATPP 532
D L +RCAQYKKDGC FAKWRCV ++ P
Sbjct: 127 DGLGERCAQYKKDGCDFAKWRCVLKITDYTP 157
Score = 133 bits (321), Expect = 2e-31
Identities = 64/85 (75%), Positives = 72/85 (84%)
Frame = +1
Query: 508 VKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLA 687
+KI TPS A++ENANVLARYASICQ +VPIVEPEVL DG+H L+RAQKVTE VL+
Sbjct: 150 LKITDYTPSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQKVTEAVLS 209
Query: 688 AVYKALNDHHVYLEGTLLKPNMVTA 762
A YKAL DHH+YLEGTLLKPNMVTA
Sbjct: 210 ATYKALMDHHIYLEGTLLKPNMVTA 234
Score = 98.7 bits (235), Expect = 5e-21
Identities = 48/58 (82%), Positives = 53/58 (91%)
Frame = +3
Query: 81 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 254
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTS 63
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 325 WNPSGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 486
W P G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +1
Query: 298 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 468
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 359 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 418
Query: 469 QEGRLPLRQ 495
+ GR P Q
Sbjct: 419 EPGRPPYEQ 427
Score = 31.9 bits (69), Expect = 0.61
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 298 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 468
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 469 QEGRLP 486
+ GR P
Sbjct: 384 EPGRPP 389
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 298 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 468
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 390
Query: 469 QEGRLP 486
+ GR P
Sbjct: 391 EPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +1
Query: 298 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 468
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 125 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 184
Query: 469 QEGRLPLRQ 495
+ GR P Q
Sbjct: 185 EPGRPPYEQ 193
Score = 31.9 bits (69), Expect = 0.61
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 298 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 468
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 469 QEGRLP 486
+ GR P
Sbjct: 150 EPGRPP 155
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +1
Query: 298 RDPLPEG*RWNPSGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 468
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 156
Query: 469 QEGRLP 486
+ GR P
Sbjct: 157 EPGRPP 162
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 439 GRPRPALRPVQEGRLPLRQVA--LRVKIGRNT 528
GR LRP+++GR P R+V LR+K+ R T
Sbjct: 940 GRRFRTLRPLKKGRFPFRKVGGRLRIKLDRRT 971
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 275 ISGVILFHETLYQKADDGTPLVSLLEKK 358
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_17144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 682 ERPQSPSGRGPGRARHQVRLRARQLARCVGS 590
ERP + R PGR RHQ ++Q C+ S
Sbjct: 154 ERPYTSKKRRPGRPRHQATTSSKQPISCLTS 184
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 465 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 343
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/75 (33%), Positives = 30/75 (40%)
Frame = -1
Query: 733 SPRGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGREHWR 554
SPR R S R R +SP R R+R R+R R +R R RRS R
Sbjct: 305 SPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRIRYRSRSR---PPRGRRSQSPRRR 361
Query: 553 FPG*LGTRGCCGQSS 509
R C +SS
Sbjct: 362 RTRSRSRRRCRSKSS 376
>SB_37929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 193 TSAWRTQRRTVVVIANCYSALRCALREHLWCDPV 294
T+ + R TV I NCYSA+R + C+ V
Sbjct: 93 TNCYSATRATVSTITNCYSAMRATVATITNCNGV 126
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = -1
Query: 730 PRGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQL 608
P G R P R P R + PSGR P R RL +RQL
Sbjct: 371 PSGRLPSRRLPSGRLPSR-RFPSGRLPSRRLPSGRLPSRQL 410
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 95 GGAQEDRSSNCSSRKGYPGR*RIHRYNG-QAFAGHRRGEHRGEPSS 229
GG+Q + +GYPG R + G QA AG G RG P +
Sbjct: 618 GGSQAEAGGMWGGARGYPGTGRKGGHGGSQAKAGGMWGGARGYPGT 663
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 331 PSGLP-AGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQ--EGRLPLRQ 495
PSG P G+EG P+ G+ RP+ RR + G+P P+ GRL ++Q
Sbjct: 333 PSGAPPTGDEGMAPQ-PGQGQARPSYMNKRRQYPAQGGQPGYGAMPLDGPMGRLTVQQ 389
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 536 YEGVLRPIFTRNATWRSGSRPSCTGRSAGRGRPDPG 429
Y+ LR T ++TW G R +GRG D G
Sbjct: 165 YDPTLRSRITSDSTWDRGENNDNNWRFSGRGDEDDG 200
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +3
Query: 66 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 194
YF + ++++K A IVA AK LAA EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 524 TPPRTKLSRKTPMFSPATPPSVRANASCQLSSPKSYLMASTTWT 655
+P S +P +SPA P + A+ S +SP SY AS ++T
Sbjct: 711 SPASPSYSPTSPSYSPAIPSNSPASPSYSPASP-SYTPASPSYT 753
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1
Query: 739 GVSPRGTRGGRSAPYTRRPERPQSPSGRGPGRAR 638
G SP G++G S YT P R SPSG GP +R
Sbjct: 592 GFSP-GSQGTPSQGYT--PNRLASPSGYGPSDSR 622
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 694 TRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGR 566
T P + GRG GRAR + R R R A + + R R GR
Sbjct: 793 TASPSTAEGKRGRGRGRARGRGRTRGRGTAP-IRTSRGRGRGR 834
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 527 PPRTKLSRKTPMFSP-ATPPSVRANASCQLSSPKS 628
P T +S TP+ P A PP+ +A LSSP S
Sbjct: 252 PLLTTMSLDTPLAEPPAPPPTTPTSAGAPLSSPPS 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,710,556
Number of Sequences: 59808
Number of extensions: 658036
Number of successful extensions: 2198
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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