Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0002
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   9.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.9  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 700 PYTRRPERPQSPSGRGPGRARHQVRLRARQLAR 602
           P TRR +R  +     P   R +    A QLAR
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLAR 34


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 454 ALRPVQEGRLPLRQVALRVKIGRNT 528
           ALR +Q G+L  R+ A+   I R+T
Sbjct: 599 ALRDIQSGKLGTRRAAVIYGIPRST 623


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 234 DNDDGSPLCSPRRCPANACPLYRWIRQRPGYP 139
           D   G+P+C       N   L +W   + G+P
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 337  GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 465
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 555 VFLDSLVRGGVAANLHTQR 499
           VFL++++R  V    HT+R
Sbjct: 61  VFLENVIRDAVTYTEHTKR 79


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 516 WPQHPLVP 539
           WPQH L+P
Sbjct: 583 WPQHMLIP 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,951
Number of Sequences: 438
Number of extensions: 5537
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)