Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0001
         (734 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1ZJ37 Cluster: DNA recombination protein RmuC; n=2; Ps...    33   9.6  

>UniRef50_Q1ZJ37 Cluster: DNA recombination protein RmuC; n=2;
           Psychromonas|Rep: DNA recombination protein RmuC -
           Psychromonas sp. CNPT3
          Length = 460

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 436 PALIFASEN*RPKLIYFYNDNGVPLMLHFST*CLVRPCQCFWQYKLHHLTGNHLACQL-K 612
           PA I A E+  P+L+    DN + L    +    +R  +  W++   H  G H+A Q  K
Sbjct: 313 PAFIVAIEH-DPELVKLALDNNILLASPTNLMIALRTIENLWRFDQQHKNGRHIAAQASK 371

Query: 613 HHLEVYIISHRYSD 654
            + ++ + SH   D
Sbjct: 372 LYDKLRLFSHNMLD 385


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,401,234
Number of Sequences: 1657284
Number of extensions: 13113255
Number of successful extensions: 23119
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23118
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)