Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0096
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   0.47 
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   7.7  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 341 PMDH---THKHNNEQVKFTTSSVVITRVLSLRASQSDDHQYSTIET 469
           P++H   T KH NE ++     V  T+ + L  +Q+D +Q S++ +
Sbjct: 170 PINHQGNTWKHANESLQSNQGPVPNTKFVGLETTQTDSYQQSSVNS 215


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 546 GVIAYASLSVRFAYNGVSRPELVE*VSTSTLVPQEQPSSV 665
           G ++  +L++ F +    RP+LV  V T+    + QP +V
Sbjct: 15  GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,396
Number of Sequences: 5004
Number of extensions: 43383
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)