Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0096
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35675| Best HMM Match : TB (HMM E-Value=8.4)                        29   2.7  
SB_55691| Best HMM Match : Ribosomal_L10e (HMM E-Value=6.5)            29   2.7  
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          29   4.6  

>SB_35675| Best HMM Match : TB (HMM E-Value=8.4)
          Length = 251

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 395 YWL*ILP-VHYCVCVCD---PLDTTKYCIFINDSIRVIASN*FY*FTS--MKDSNVLIFH 234
           Y+  I P + YC+CV     P +  +  +    ++R+I++  +   T    KD N+L FH
Sbjct: 111 YYSLIFPYLQYCICVWGSTYPSNVNRLFLLQKRAVRIISNKPYDAHTEPIFKDLNILKFH 170

Query: 233 C 231
           C
Sbjct: 171 C 171


>SB_55691| Best HMM Match : Ribosomal_L10e (HMM E-Value=6.5)
          Length = 189

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 326 SI*SYPMDHTHKHNNEQVKFTTSSVVITRVLSLRASQSDDHQ 451
           SI ++P+ ++    N       +  V T++LS+RA +   HQ
Sbjct: 57  SILTFPLSYSQSSGNSPTMLAGAGAVCTKLLSVRAPEKKPHQ 98


>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 28  FTLIGLVFLIEDRISQAYSHVILFMFTF 111
           +TL+GLV   E      YSHV+LF+FTF
Sbjct: 446 YTLMGLVLSAE-----YYSHVLLFIFTF 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,638
Number of Sequences: 59808
Number of extensions: 305438
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)