Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0096
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z99283-2|CAB16535.1|  274|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 12  FLIFDLHINWIG-LFN*GSDFSSIQPRYTIYVYFLKQIFE 128
           +L+ +  +N++G ++    +FSSIQP   +Y YF  QIFE
Sbjct: 232 YLLNNQSLNFLGPVYASILNFSSIQPNSGLYWYFFVQIFE 271


>Z99283-2|CAB16535.1|  274|Caenorhabditis elegans Hypothetical
           protein Y70C5C.3 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 380 LPVHYCVCVCDPLDTTKYCIFINDSIRVIASN 285
           LP++YC    + +D  K C+F + ++R + S+
Sbjct: 146 LPINYCPVTSNIIDGDKVCVFEDMNVRNLDSD 177


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 350 HTHKHNNE-QVKFTTSSVVITRVLSLRASQSDDHQYSTIETNC 475
           H   H +  ++K +TS  V+ + LSLR   S+++  + +  NC
Sbjct: 103 HMTVHTDSYKMKVSTSKQVVRKELSLRTGSSNENGCACVHGNC 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,970
Number of Sequences: 27780
Number of extensions: 242701
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)