Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0096
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 236 HCKCILSMNPTFIVLCDNVTF 174
           H  C L + PT+ V+  +++F
Sbjct: 181 HPTCALDLTPTYAVVSSSISF 201


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 225 TFTMKN*YVRIFH*SKLIELIRSDYSDA 308
           T T +N  + + H SKL+EL  S  +DA
Sbjct: 117 TLTSENVEILLEHSSKLVELFLSLGADA 144


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -1

Query: 589 LYANLTDNDAYAITPDVIFWKNLLLDPFYNEDEEDEVGTICFYC 458
           ++ N++  +  AIT     W+ +     Y +   D VG   F C
Sbjct: 415 IFKNMSQIEREAITFQYTDWEEVYNGYIYQKMVADVVGDYFFIC 458


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -1

Query: 589 LYANLTDNDAYAITPDVIFWKNLLLDPFYNEDEEDEVGTICFYC 458
           ++ N++  +  AIT     W+ +     Y +   D VG   F C
Sbjct: 415 IFKNMSQIEREAITFQYTDWEEVYNGYIYQKMVADVVGDYFFIC 458


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = -3

Query: 254 SNVLIFHCKCILSMNPTFIVLCDNVTF 174
           S + +F C+ + + +  F  LC+++ +
Sbjct: 133 SKLQVFDCRYVTTTSGMFEALCNHIKY 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,366
Number of Sequences: 438
Number of extensions: 3047
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)