Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0095
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 260 4e-70
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 260 4e-70
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 260 4e-70
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 258 2e-69
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 241 3e-64
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 234 2e-62
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 233 5e-62
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 233 5e-62
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 232 1e-61
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 232 1e-61
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 227 3e-60
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 227 3e-60
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 216 6e-57
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 215 2e-56
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 200 6e-52
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 171 3e-43
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 132 2e-31
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 131 3e-31
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 130 4e-31
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 128 2e-30
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 128 2e-30
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 126 1e-29
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 108 2e-24
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 108 2e-24
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 69 1e-12
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 69 1e-12
AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical ... 32 0.26
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 1.8
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 1.8
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 1.8
Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical pr... 27 7.4
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 27 7.4
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 27 7.4
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 27 7.4
Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical pr... 27 9.8
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 9.8
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 260 bits (637), Expect = 4e-70
Identities = 114/141 (80%), Positives = 128/141 (90%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
HVPRAV VDLEPTV+DE+RTGTYR LFHP QLITGKEDAANNYARGHYTIGKEI++L LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L CT LQ FL+FHSF
Sbjct: 121 RIRRLADNCTGLQGFLVFHSF 141
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 260 bits (637), Expect = 4e-70
Identities = 114/141 (80%), Positives = 128/141 (90%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
HVPRAV VDLEPTV+DE+RTGTYR LFHP QLITGKEDAANNYARGHYTIGKEI++L LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L CT LQ FL+FHSF
Sbjct: 121 RIRRLADNCTGLQGFLVFHSF 141
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 260 bits (637), Expect = 4e-70
Identities = 114/141 (80%), Positives = 128/141 (90%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
HVPRAV VDLEPTV+DE+RTGTYR LFHP QLITGKEDAANNYARGHYTIGKEI++L LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L CT LQ FL+FHSF
Sbjct: 121 RIRRLADNCTGLQGFLVFHSF 141
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 258 bits (632), Expect = 2e-69
Identities = 113/140 (80%), Positives = 127/140 (90%)
Frame = +3
Query: 72 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 251
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDSF+TFFSETG+G+H
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 252 VPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLDI 431
VPRAV VDLEPTV+DE+RTGTYR LFHP QLITGKEDAANNYARGHYTIGKEI++L LD
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDR 120
Query: 432 IHKLTYQCTILQRFLIFHSF 491
I +L CT LQ FL+FHSF
Sbjct: 121 IRRLADNCTGLQGFLVFHSF 140
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 241 bits (589), Expect = 3e-64
Identities = 105/141 (74%), Positives = 123/141 (87%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
HVPRA+FVDLEPTV+DEVRTGTY +LFHP QLI+GKEDAANNYARGHYTIGKE++++V+D
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVMD 120
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
+ +LT +C LQ FLIFHSF
Sbjct: 121 RVRRLTERCQSLQGFLIFHSF 141
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 234 bits (573), Expect = 2e-62
Identities = 102/142 (71%), Positives = 121/142 (85%)
Frame = +3
Query: 66 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAG 245
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 246 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVL 425
KHVPRA+ VDLEPT +DE+RTGTY+ LFHP QL+TGKEDAANNYARGHYTIGKEI+++V+
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVVM 124
Query: 426 DIIHKLTYQCTILQRFLIFHSF 491
D + +L C LQ FL+FHSF
Sbjct: 125 DRVRRLVENCRGLQGFLVFHSF 146
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 233 bits (570), Expect = 5e-62
Identities = 103/141 (73%), Positives = 122/141 (86%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPR++FVDLEPTVVDE+RTGTY++LFHP Q+ITGKEDAANNYARGHYT+GKE+++ VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C+ LQ F +FHSF
Sbjct: 119 RIRRLADNCSGLQGFFVFHSF 139
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 233 bits (570), Expect = 5e-62
Identities = 103/141 (73%), Positives = 122/141 (86%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPR++FVDLEPTVVDE+RTGTY++LFHP Q+ITGKEDAANNYARGHYT+GKE+++ VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C+ LQ F +FHSF
Sbjct: 119 RIRRLADNCSGLQGFFVFHSF 139
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 232 bits (567), Expect = 1e-61
Identities = 102/141 (72%), Positives = 122/141 (86%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPR++FVDLEPTVVDE+RTGTY++LFHP Q+ITGKEDAANNYARGHYT+GKE+++ VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C+ LQ F +FHSF
Sbjct: 119 RIRRLADNCSGLQGFFVFHSF 139
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 232 bits (567), Expect = 1e-61
Identities = 102/141 (72%), Positives = 122/141 (86%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPR++FVDLEPTVVDE+RTGTY++LFHP Q+ITGKEDAANNYARGHYT+GKE+++ VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C+ LQ F +FHSF
Sbjct: 119 RIRRLADNCSGLQGFFVFHSF 139
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 227 bits (555), Expect = 3e-60
Identities = 100/141 (70%), Positives = 120/141 (85%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPR++FVDLEPTVVDE+RTG Y++LFHP Q+ITGKEDAANNYARGHYT+GKE+++ LD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLD 118
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C+ LQ F +FHSF
Sbjct: 119 RIRRLADNCSGLQGFFVFHSF 139
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 227 bits (555), Expect = 3e-60
Identities = 100/141 (70%), Positives = 120/141 (85%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPR++FVDLEPTVVDE+RTG Y++LFHP Q+ITGKEDAANNYARGHYT+GKE+++ LD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLD 118
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C+ LQ F +FHSF
Sbjct: 119 RIRRLADNCSGLQGFFVFHSF 139
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 216 bits (528), Expect = 6e-57
Identities = 97/141 (68%), Positives = 112/141 (79%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG T G S TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG---TSMEPDGNSGSLGTFFSDTGYGR 57
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
HVPR++FVDLEPTVVDE+RTG Y++LFHP Q++TGKEDAANNYARGHYT+GKEI++ LD
Sbjct: 58 HVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTTLD 117
Query: 429 IIHKLTYQCTILQRFLIFHSF 491
I +L C LQ F +FHSF
Sbjct: 118 RIRRLANNCEGLQGFFVFHSF 138
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 215 bits (524), Expect = 2e-56
Identities = 96/140 (68%), Positives = 113/140 (80%)
Frame = +3
Query: 72 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 251
RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET GKH
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 252 VPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLDI 431
VPR +FVDLEPTVVDEVRTGTYR LFHP QL++GKEDAAN YARG YTIG+E++++V+D
Sbjct: 68 VPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDR 127
Query: 432 IHKLTYQCTILQRFLIFHSF 491
+ +L C LQ F+IFHSF
Sbjct: 128 VKRLAENCNGLQGFVIFHSF 147
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 200 bits (487), Expect = 6e-52
Identities = 88/140 (62%), Positives = 107/140 (76%)
Frame = +3
Query: 72 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 251
REC+S+H+GQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ GKH
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKH 64
Query: 252 VPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLDI 431
VPRA++VDLEPTV+DE+R G Y LFHP Q+I GKEDAANNYARGHYTIGKE++++VLD
Sbjct: 65 VPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDR 124
Query: 432 IHKLTYQCTILQRFLIFHSF 491
I K T C LQ FL+FHSF
Sbjct: 125 IRKQTENCEGLQGFLVFHSF 144
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 171 bits (415), Expect = 3e-43
Identities = 76/119 (63%), Positives = 93/119 (78%)
Frame = +3
Query: 135 LYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 314
++CLEHGIQPDG D T ++ NTFF+ET GKHVPR +FVDLEPTVVDEVRTGT
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGT 60
Query: 315 YRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLDIIHKLTYQCTILQRFLIFHSF 491
YR LFHP QL++GKEDAAN YARG YTIG+E++++V+D + +L C LQ F+IFHSF
Sbjct: 61 YRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDRVKRLAENCNGLQGFVIFHSF 119
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 132 bits (318), Expect = 2e-31
Identities = 63/140 (45%), Positives = 85/140 (60%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE + V GQ G QIG WE+ EHGIQPDG + + + N +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQL--ERINVYYNEANGGK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRAV VDLEP +D VR+G + QLF P + G+ A NN+A+GHYT G E+++ VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
++ K C LQ F + HS
Sbjct: 119 VVRKEAEGCDCLQGFQLTHS 138
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 131 bits (316), Expect = 3e-31
Identities = 63/140 (45%), Positives = 86/140 (61%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQL--ERIDVYYNEANNGK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRAV VDLEP +D VR+G + QLF P + G+ A NN+A+GHYT G E+++ VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
+I K C LQ F + HS
Sbjct: 119 VIRKEAEGCDCLQGFQLTHS 138
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 130 bits (315), Expect = 4e-31
Identities = 63/140 (45%), Positives = 86/140 (61%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE + V GQ G QIG+ WE+ EHGIQPDG + + + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQL--ERIDVYYNEANNGK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRAV VDLEP +D VR+G + QLF P + G+ A NN+A+GHYT G E+++ VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
+I K C LQ F + HS
Sbjct: 119 VIRKEAEGCDCLQGFQLTHS 138
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 128 bits (310), Expect = 2e-30
Identities = 61/140 (43%), Positives = 85/140 (60%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRAV VDLEP +D VR+G + QLF P + G+ A NN+A+GHYT G E+++ VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
++ K LQ F + HS
Sbjct: 119 VVRKEAESTDCLQGFQLTHS 138
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 128 bits (310), Expect = 2e-30
Identities = 61/140 (43%), Positives = 85/140 (60%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE + + GQ G QIG+ WE+ EHGI P GQ D + + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRAV VDLEP +D VR+G + QLF P + G+ A NN+A+GHYT G E+++ VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
++ K LQ F + HS
Sbjct: 119 VVRKEAESTDCLQGFQLTHS 138
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 126 bits (303), Expect = 1e-29
Identities = 60/140 (42%), Positives = 81/140 (57%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQL--ERINVYYNEASGGK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRA VDLEP +D VR G + QLF P + G+ A NN+A+GHYT G E+++ VLD
Sbjct: 59 YVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
++ K C LQ F + HS
Sbjct: 119 VVRKEAESCDCLQGFQMTHS 138
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 108 bits (259), Expect = 2e-24
Identities = 54/140 (38%), Positives = 80/140 (57%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRA+ VDL+P ++ VR+ Y +LF P ++G+ A NN++RG+Y G EI++ VL
Sbjct: 59 YVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLS 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
+I + L+ F + HS
Sbjct: 119 VIRREAEAADSLEGFQLIHS 138
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 108 bits (259), Expect = 2e-24
Identities = 54/140 (38%), Positives = 80/140 (57%)
Frame = +3
Query: 69 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 248
M+E I+V VGQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 249 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPXQLITGKEDAANNYARGHYTIGKEILNLVLD 428
+VPRA+ VDL+P ++ VR+ Y +LF P ++G+ A NN++RG+Y G EI++ VL
Sbjct: 59 YVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLS 118
Query: 429 IIHKLTYQCTILQRFLIFHS 488
+I + L+ F + HS
Sbjct: 119 VIRREAEAADSLEGFQLIHS 138
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 69.3 bits (162), Expect = 1e-12
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Frame = +3
Query: 81 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 260
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 261 AVFVDLEPTVVD-EVRTGTYRQLFHPXQLITGKE--DAANNYARGHYTIGKEILNLVLDI 431
AV VDLEP V++ +++ + LF+ + A NN+A G Y G+E+ ++DI
Sbjct: 65 AVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDI 123
Query: 432 IHKLTYQCTILQRFLIFHS 488
I + L L HS
Sbjct: 124 IIREAENTNNLDGILFTHS 142
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 69.3 bits (162), Expect = 1e-12
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Frame = +3
Query: 81 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPR 260
++VHVGQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 261 AVFVDLEPTVVD-EVRTGTYRQLFHPXQLITGKE--DAANNYARGHYTIGKEILNLVLDI 431
AV VDLEP V++ +++ + LF+ + A NN+A G Y G+E+ ++DI
Sbjct: 65 AVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDI 123
Query: 432 IHKLTYQCTILQRFLIFHS 488
I + L L HS
Sbjct: 124 IIREAENTNNLDGILFTHS 142
>AL161712-9|CAC70134.1| 343|Caenorhabditis elegans Hypothetical
protein Y66D12A.12 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.26
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 97 AKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELAST 252
A P MP+ S + S++SS M + P+ PS ++T+L+++ + E AST
Sbjct: 189 ATPALLPFMPSSSTFSASSSSSEMEQTPE--PSSLDTVLTSMMNNNEEAAST 238
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 111 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 290
QI +C CL +G++P G P I G FF+++G ++ F ++ P
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSGLKRN---KKFANVSPQT 115
Query: 291 VDE 299
DE
Sbjct: 116 ADE 118
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 111 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 290
QI +C CL +G++P G P I G FF+++G ++ F ++ P
Sbjct: 81 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSGLKRN---KKFANVSPQT 133
Query: 291 VDE 299
DE
Sbjct: 134 ADE 136
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 111 QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 290
QI +C CL +G++P G P I G FF+++G ++ F ++ P
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG----RAFFTKSGLKRN---KKFANVSPQT 115
Query: 291 VDE 299
DE
Sbjct: 116 ADE 118
>Z81059-3|CAB02927.1| 246|Caenorhabditis elegans Hypothetical
protein F11F1.5 protein.
Length = 246
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 342 LITGKEDAANNYARGHYTIGKEILNLVLDIIHKL 443
L+ G D NN +T+ K++LN V DI+ L
Sbjct: 151 LVPGLGDELNNLISTIFTLIKQLLNEVADILQSL 184
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 219 TFFSETGAGKHVPRAVFVDLEPTVVD 296
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 219 TFFSETGAGKHVPRAVFVDLEPTVVD 296
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 219 TFFSETGAGKHVPRAVFVDLEPTVVD 296
T ++ TG+GK++ F DL P + D
Sbjct: 131 TTYTSTGSGKNIEYITFFDLTPIIKD 156
>Z50795-5|CAA90665.2| 705|Caenorhabditis elegans Hypothetical
protein R166.5a protein.
Length = 705
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 144 LEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE 281
L H Q D +P + +GGG +F+ + +HV + F D E
Sbjct: 29 LNHLGQVDN-IPNNSAVGGGGAAFHHLHTSAATPRHVATSEFYDDE 73
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 GQMPTDKTIGGGDDSFNTFFSE-TGAGKHVPRAVFVDLEPTVVDEVRTGT 314
GQMPTDK + S NT +S+ T A + + + P+ V V T
Sbjct: 156 GQMPTDKNVNSVITSDNTTYSDVTTAPQACDKTIIQSDCPSTVAPVTCST 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,789
Number of Sequences: 27780
Number of extensions: 261231
Number of successful extensions: 678
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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