Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0094
(1287 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q53GM6 Cluster: U5 snRNP-specific protein variant; n=13... 392 e-107
UniRef50_Q6P2Q9 Cluster: Pre-mRNA-processing-splicing factor 8; ... 392 e-107
UniRef50_A6R4K4 Cluster: Pre-mRNA processing splicing factor 8; ... 206 7e-52
UniRef50_Q8I1X5 Cluster: Pre-mRNA splicing factor, putative; n=1... 123 9e-27
UniRef50_A4IBT3 Cluster: PRP8 protein homologue, putative; n=8; ... 111 5e-23
UniRef50_Q2Y8H2 Cluster: Putative uncharacterized protein; n=1; ... 36 1.7
UniRef50_Q4QET4 Cluster: Metallopeptidase, putative; n=3; Leishm... 36 2.3
UniRef50_Q4W1T6 Cluster: Putative uncharacterized protein hlyI; ... 35 4.0
UniRef50_UPI00004D28A3 Cluster: AT-rich interactive domain-conta... 34 6.9
UniRef50_Q9DFS2 Cluster: Biklf; n=2; Danio rerio|Rep: Biklf - Da... 34 6.9
UniRef50_A4XAZ2 Cluster: YD repeat protein; n=3; Salinispora|Rep... 34 9.2
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 34 9.2
UniRef50_P34468 Cluster: Uncharacterized protein F58A4.1; n=2; C... 34 9.2
>UniRef50_Q53GM6 Cluster: U5 snRNP-specific protein variant; n=13;
Eukaryota|Rep: U5 snRNP-specific protein variant - Homo
sapiens (Human)
Length = 398
Score = 392 bits (965), Expect = e-107
Identities = 169/225 (75%), Positives = 193/225 (85%)
Frame = -2
Query: 815 KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
K + I LRAQIA YLYG SP DNP +E+ C V+ PQWGTHQ VHLP LP+H L +
Sbjct: 176 KFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEM 235
Query: 635 QPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTP 456
+PLGW+HTQPNE PQLSPQD+TTHAKIM+DN SWDGEKTIIITCSFTPGSC+LTAYKLTP
Sbjct: 236 EPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTP 295
Query: 455 SGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNM 276
SGYEWG +NTD+GNNPKGYLPSHYERVQMLLSDRFLG+FMVP+Q SWNYNFMGVRHDPNM
Sbjct: 296 SGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNM 355
Query: 275 KYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 141
KY +QL NP+EFYHEVHRP+HF+NFA +++ +ADREDL+A
Sbjct: 356 KYELQLANPKEFYHEVHRPSHFLNFALLQE--GEVYSADREDLYA 398
>UniRef50_Q6P2Q9 Cluster: Pre-mRNA-processing-splicing factor 8;
n=106; Eukaryota|Rep: Pre-mRNA-processing-splicing factor
8 - Homo sapiens (Human)
Length = 2335
Score = 392 bits (965), Expect = e-107
Identities = 169/225 (75%), Positives = 193/225 (85%)
Frame = -2
Query: 815 KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
K + I LRAQIA YLYG SP DNP +E+ C V+ PQWGTHQ VHLP LP+H L +
Sbjct: 2113 KFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEM 2172
Query: 635 QPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTP 456
+PLGW+HTQPNE PQLSPQD+TTHAKIM+DN SWDGEKTIIITCSFTPGSC+LTAYKLTP
Sbjct: 2173 EPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTP 2232
Query: 455 SGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNM 276
SGYEWG +NTD+GNNPKGYLPSHYERVQMLLSDRFLG+FMVP+Q SWNYNFMGVRHDPNM
Sbjct: 2233 SGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNM 2292
Query: 275 KYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 141
KY +QL NP+EFYHEVHRP+HF+NFA +++ +ADREDL+A
Sbjct: 2293 KYELQLANPKEFYHEVHRPSHFLNFALLQE--GEVYSADREDLYA 2335
>UniRef50_A6R4K4 Cluster: Pre-mRNA processing splicing factor 8; n=1;
Ajellomyces capsulatus NAm1|Rep: Pre-mRNA processing
splicing factor 8 - Ajellomyces capsulatus NAm1
Length = 2739
Score = 206 bits (504), Expect = 7e-52
Identities = 105/229 (45%), Positives = 142/229 (62%), Gaps = 4/229 (1%)
Frame = -2
Query: 815 KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
+ +TI LR Q+A YLYG SP DN +E+ V+ PQ G + + LP LP+H L+ L
Sbjct: 2517 RFITIADLRVQVAGYLYGGSPPDNDQVKEIRTIVMIPQVGNTRDIQLPHQLPQHEYLSSL 2576
Query: 635 QPLGWMHT-QPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLT 459
+PLG +HT NE ++ D+T HA++M+ +SSWD +KT+ +T SFTPGS SL+A+ LT
Sbjct: 2577 EPLGVIHTLSGNEPSYMTAMDVTQHARLMNAHSSWD-KKTVTMTVSFTPGSVSLSAWALT 2635
Query: 458 PSGYEWGVRNTDRGNN-PKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDP 282
P GY+WG N D ++ P+GY S E+ Q+LLSD+ GYF+VP WNY+FMG
Sbjct: 2636 PQGYKWGAENKDTSSDQPQGYSTSMGEKCQLLLSDKIRGYFLVPENNVWNYSFMGSSFSS 2695
Query: 281 NMK--YGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 141
K V++ P FY + HRP HF NFA +ED I DR D FA
Sbjct: 2696 LEKRPIYVKIDTPLRFYDDQHRPLHFQNFAELED-----IWVDRVDNFA 2739
>UniRef50_Q8I1X5 Cluster: Pre-mRNA splicing factor, putative; n=1;
Plasmodium falciparum 3D7|Rep: Pre-mRNA splicing factor,
putative - Plasmodium falciparum (isolate 3D7)
Length = 3136
Score = 123 bits (297), Expect = 9e-27
Identities = 55/123 (44%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Frame = -2
Query: 536 WDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGVRNTDRGNNPKGYLPSH---YERVQML 366
WD KTII+TCSFTPGSC++ AYKLT GY + + + ++ P+ YE VQ+L
Sbjct: 3006 WDKNKTIILTCSFTPGSCTINAYKLTSDGYSFA--KSKKNSSDLYVFPNVNNLYEPVQIL 3063
Query: 365 LSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMED 186
LS+ F+GYF++P WNYN MG++ + N KY L P+ FY ++HRP HF+ F+ ++
Sbjct: 3064 LSNVFVGYFLIPDDHIWNYNLMGIKFNNNQKYAPHLDIPQPFYADIHRPNHFLQFSLLDQ 3123
Query: 185 AAA 177
A
Sbjct: 3124 RDA 3126
Score = 70.5 bits (165), Expect = 9e-11
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Frame = -2
Query: 815 KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
K + I L+ Q+ +L+G+SP DN +E+ C ++PPQ G +Q V L ++P L +L
Sbjct: 2851 KFICISDLKIQVGGFLFGSSPEDNSYVKEIKCILIPPQIGNYQSVTLSSYMPSSKYLQNL 2910
Query: 635 QPLGWMHTQ----PNELPQLSPQDITTHAKIMSD 546
+ LGW+HTQ N L+ D+ H + +
Sbjct: 2911 ELLGWIHTQTTNCSNTNNHLTAYDMVAHFNFLQE 2944
>UniRef50_A4IBT3 Cluster: PRP8 protein homologue, putative; n=8;
Trypanosomatidae|Rep: PRP8 protein homologue, putative -
Leishmania infantum
Length = 2427
Score = 111 bits (266), Expect = 5e-23
Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 5/236 (2%)
Frame = -2
Query: 836 FAEEPT*KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPK 657
F+E+ K + ++ Q Y++G + D+P +EV C ++PPQ+GT + P +P
Sbjct: 2184 FSEDAIQKLLACCDVKVQCCAYMFGHALPDSPNIKEVLCVMIPPQFGTAVEARTPPRIPF 2243
Query: 656 HPAL---AHLQPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGS 486
A A+L LG M +E QL+ D+ A+ + N + + +
Sbjct: 2244 DAAALQEANLSFLGLMRIGESEA-QLTSHDLALQARALIANEGMVPQGFVTAVLEMSEEG 2302
Query: 485 CSLTAYKLTPSGYEWGVRNTDR--GNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWN 312
Y T G W +R P+ PS + LS +F+VP+ WN
Sbjct: 2303 VMARCYSTTADGIAWAQSEHERLLKRTPEATDPSFSSPCRGTLSSEARSFFLVPADRVWN 2362
Query: 311 YNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLF 144
Y F G N +Y V + P F+H +HRP HF+NF + D A D D+F
Sbjct: 2363 YFFKGALWRENTEYDVVVDVPLPFFHALHRPDHFLNFTRIGDGAEVVDETDPNDVF 2418
>UniRef50_Q2Y8H2 Cluster: Putative uncharacterized protein; n=1;
Nitrosospira multiformis ATCC 25196|Rep: Putative
uncharacterized protein - Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849)
Length = 100
Score = 36.3 bits (80), Expect = 1.7
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +3
Query: 225 VNLVVELARVAELHTVLHIRVVTDAHKVIIPTALGRHHEIAQESI*EQHLHSLVM 389
+ ++V LA +A +T +H+R+ TD K++ P A + + + E Q LH+L++
Sbjct: 37 LTILVVLATLAFQYTFVHLRINTDTAKLVAPDAPFQQYSRSYEEAFSQDLHTLLL 91
>UniRef50_Q4QET4 Cluster: Metallopeptidase, putative; n=3;
Leishmania|Rep: Metallopeptidase, putative - Leishmania
major
Length = 478
Score = 35.9 bits (79), Expect = 2.3
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = -2
Query: 686 QVHLPKHLPKHPALAHLQP--LGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTII 513
Q+++ +L H L +P LGW HT P LS D+TT W I
Sbjct: 138 QIYMANYLEYHRRLGKAEPGCLGWYHTHPGYSCFLSGIDVTTQQGSQQIQDPWVA-LVID 196
Query: 512 ITCSFTPGSCSLTAYKLTPSGYEWGVRN 429
+ G S+ A++ P G G R+
Sbjct: 197 PVKTLQTGQFSMKAFRTYPGGDFQGQRS 224
>UniRef50_Q4W1T6 Cluster: Putative uncharacterized protein hlyI;
n=1; Pseudomonas aeruginosa|Rep: Putative
uncharacterized protein hlyI - Pseudomonas aeruginosa
Length = 257
Score = 35.1 bits (77), Expect = 4.0
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 482 SLTAYKLTPSGYE--WGVRNTDRGNNPKGYLPSHYERVQ 372
+L Y+++PSG RN +R + PKGY PS YE+ Q
Sbjct: 135 TLVVYRVSPSGSSSFTDSRNVNRTSAPKGYAPSLYEKYQ 173
>UniRef50_UPI00004D28A3 Cluster: AT-rich interactive domain-containing
protein 1A (ARID domain- containing protein 1A)
(SWI/SNF-related, matrix-associated, actin- dependent
regulator of chromatin subfamily F member 1) (SWI-SNF
complex protein p270) (B120) (SWI-like protein) (Osa
homolog; n=1; Xenopus tropicalis|Rep: AT-rich interactive
domain-containing protein 1A (ARID domain- containing
protein 1A) (SWI/SNF-related, matrix-associated, actin-
dependent regulator of chromatin subfamily F member 1)
(SWI-SNF complex protein p270) (B120) (SWI-like protein)
(Osa homolog - Xenopus tropicalis
Length = 1913
Score = 34.3 bits (75), Expect = 6.9
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 710 PPQWGTHQQVHLPKHLPKHPALAHLQPLGWMHTQPNELPQLSPQ 579
PPQ G +P HLP+ P+ A +PL HT P++ P L Q
Sbjct: 1223 PPQSGYQASPSMPNHLPQVPSPATPRPLE-AHTSPSKSPFLKMQ 1265
>UniRef50_Q9DFS2 Cluster: Biklf; n=2; Danio rerio|Rep: Biklf - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 409
Score = 34.3 bits (75), Expect = 6.9
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -2
Query: 728 VHCAVLPPQWGTHQQVHLPKHLPKHPALA-HLQPLGWMHTQPNE--LPQLSPQDITTHAK 558
++ A PPQ+ HQQ H ++ P A H G M T P+ L LSP+D +K
Sbjct: 255 INNAHFPPQYAQHQQYHGHFNMFSEPLRANHPAMPGVMLTPPSSPLLGFLSPED----SK 310
Query: 557 IMSDNSSWDGEKTIIITCSFTPGSCSLTAYK 465
SW ++T +C F PG C T K
Sbjct: 311 PKRGRRSWARKRTATHSCEF-PG-CGKTYTK 339
>UniRef50_A4XAZ2 Cluster: YD repeat protein; n=3; Salinispora|Rep:
YD repeat protein - Salinispora tropica CNB-440
Length = 2007
Score = 33.9 bits (74), Expect = 9.2
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = -3
Query: 364 SQIDSWAISWCRPRAVGIITLWASVTTRI*STVCNSATLASSTT 233
S +D WAI P A G LW S TR T S TL + TT
Sbjct: 544 STVDEWAIGHQFPSAPGSPVLWLSSITRTGKTAGGSITLPALTT 587
>UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with a
BRCT domain at the N- terminus; n=2;
Cryptosporidium|Rep: DNA replication repC1, AAA+ ATpase
with a BRCT domain at the N- terminus - Cryptosporidium
parvum Iowa II
Length = 874
Score = 33.9 bits (74), Expect = 9.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 566 HAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGVRNTDRGNNPK 405
+AK+ +DN W I + C+ PG CS ++ P +W +N+ N +
Sbjct: 631 NAKLRTDNE-WSLLSEIAVNCAVAPGLCSTNSFLARPEFPKWLGKNSTTNKNKR 683
>UniRef50_P34468 Cluster: Uncharacterized protein F58A4.1; n=2;
Caenorhabditis|Rep: Uncharacterized protein F58A4.1 -
Caenorhabditis elegans
Length = 254
Score = 33.9 bits (74), Expect = 9.2
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -1
Query: 711 ASPVGHTSTSTSAETPAKTSRSSTPATPWMDAHTT 607
+SP TSTSTS T TSRS++ TP + TT
Sbjct: 95 SSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTT 129
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 948,651,144
Number of Sequences: 1657284
Number of extensions: 19077511
Number of successful extensions: 57645
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 51511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57242
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 131604446675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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