Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0094
         (1287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...   214   2e-56
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    30   0.80 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   1.4  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   2.4  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   4.2  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   9.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score =  214 bits (523), Expect = 2e-56
 Identities = 106/229 (46%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
 Frame = -2

Query: 815  KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPK--HPA-L 645
            K VTI  LR Q+A Y+YG SPSDNP  +E+ C  L PQ G+ + V LP  LP    P+ L
Sbjct: 2138 KFVTISDLRTQVAGYMYGKSPSDNPQIKEIRCIALVPQLGSIRNVQLPSKLPHDLQPSIL 2197

Query: 644  AHLQPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYK 465
              L+PLGW+HTQ +ELP LS  D+TTHAKI+S +  WD  K + +T S+ PGS SL AY 
Sbjct: 2198 EDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYT 2256

Query: 464  LTPSGYEWGVRNTDRGNNPK-GYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRH 288
            ++  G EWG +N D  ++   GY PS  E+ Q+LLSDR  G+F+VP +G WNYNF G   
Sbjct: 2257 VSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASF 2316

Query: 287  DPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 141
             P M Y ++L  P  F+   HRP H +++  +E      +  D  D FA
Sbjct: 2317 SPKMTYSLKLDVPLPFFALEHRPTHVISYTELE--TNDRLEEDMPDAFA 2363


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 698 GTHQQVHLPKHLPKHPALAHLQPLGWMHTQPNELPQLSPQDITTH 564
           GT  +  L +   KH    +L  LGW+HT P +   +S  D+ TH
Sbjct: 318 GTTDEASLFEFQDKH----NLLTLGWIHTHPTQTCFMSSVDLHTH 358


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 599 LPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGV 435
           LP  +     T + +MS   S+D + +I ++ +F+P  C +   +  P  + WGV
Sbjct: 464 LPYPTSSRKRTRSPLMSKGKSYDRKGSISMSKNFSP-DCEILVTEDCPKEFVWGV 517


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 608 PNELPQLSPQDITTHAKIMSDNSSWDGE 525
           P+ L   SP D++   K++    SWDGE
Sbjct: 112 PSYLTDSSPSDLSVENKVLLTCPSWDGE 139


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 767 YGTSPSDNPMXREVHCAVLPPQWGTHQQVHLP 672
           Y T  SD  + +   CA     W   QQ H+P
Sbjct: 40  YKTETSDKELCQTAACATSCSDWYPQQQTHMP 71


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 425 DRGNNPKGYLPSHYERVQMLLSDRFL 348
           D GN  + Y+P  YER+   + ++ +
Sbjct: 191 DNGNGEQNYIPEQYERLDSPVKEKII 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,827,505
Number of Sequences: 5004
Number of extensions: 76940
Number of successful extensions: 233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)