Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0094
         (1287 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...   355   4e-98
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    34   0.25 
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    31   1.8  
Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical pr...    30   3.1  
U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase...    29   7.1  
AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinas...    29   7.1  
U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile (un...    29   9.4  
U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical pr...    29   9.4  

>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score =  355 bits (873), Expect = 4e-98
 Identities = 156/225 (69%), Positives = 179/225 (79%)
 Frame = -2

Query: 815  KXVTIXXLRAQIACYLYGTSPSDNPMXREVHCAVLPPQWGTHQQVHLPKHLPKHPALAHL 636
            K +TI  LR QIA ++YG SP DNP  +E+ C VL PQ G+HQQV+LP  LP H  L   
Sbjct: 2106 KFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDF 2165

Query: 635  QPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTP 456
            +PLGWMHTQPNELPQLSPQD+TTHAK+++DN SWDGEKT++ITCSFTPGS SLTAYKLTP
Sbjct: 2166 EPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTP 2225

Query: 455  SGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNM 276
            SGYEWG  NTD+GNNPKGY+P+HYE+VQMLLSDRFLGYFMVPS G WNYNF G R  P M
Sbjct: 2226 SGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAM 2285

Query: 275  KYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 141
            K+ V L NP+E+YHE HRP HF NF A +D    T +ADRED FA
Sbjct: 2286 KFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLG-TGSADREDAFA 2329


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -1

Query: 711 ASPVGHTSTSTSAETPAKTSRSSTPATPWMDAHTT 607
           +SP   TSTSTS  T   TSRS++  TP   + TT
Sbjct: 95  SSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTT 129


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 714 TASPVGHTSTSTSAETPAKTSRSSTPATPWMDAHTT 607
           T +P   T+T T+  TPA T+  +T  TP     TT
Sbjct: 231 TTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTT 266


>Z81544-6|CAI46607.1|  376|Caenorhabditis elegans Hypothetical
           protein F49C5.9 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 430 FLTPHSYPLGVSLYAVREHEPGVNEQVMIIVFSPSHD-ELSDMILACVVIS 579
           FL   ++PL     A+ + EP +     +I+ SP+H   +S  +  CV+IS
Sbjct: 275 FLIYFAFPLAAFTKALHDVEPFLGNWTFLIIMSPAHFLGISLSVTYCVIIS 325


>U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase c
           protein 3 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 662 PKHPALAHLQPLGWM-HTQPNELPQLSPQDITTHAKIMSDNSSWDG 528
           P HPA+   + L    H   +ELPQLSP +    A+I  D S +DG
Sbjct: 539 PYHPAVESDRDLTHFDHQFTDELPQLSPDNPDVIARI--DQSEFDG 582


>AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinase
           C3 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 662 PKHPALAHLQPLGWM-HTQPNELPQLSPQDITTHAKIMSDNSSWDG 528
           P HPA+   + L    H   +ELPQLSP +    A+I  D S +DG
Sbjct: 539 PYHPAVESDRDLTHFDHQFTDELPQLSPDNPDVIARI--DQSEFDG 582


>U28971-1|AAA68376.2|  551|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein1 protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 733 VKCTVRYCLPSGAHINKYICRNTCQNIPL*HTCNPLDGC 617
           +KC+ + CL  G H N Y+C  + + +     C+P   C
Sbjct: 491 LKCSCQECL--GVHSNTYMCNESNRCLKRDEVCSPYSMC 527


>U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical
           protein K06A1.3 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 714 TASPVGHTSTSTSAETPAKTS-RSSTPATPWMDAHTT 607
           T S    TST+T+ ETP  T+ R +T  T  +D  TT
Sbjct: 305 TTSTTTTTSTTTATETPTTTTERPTTTVTQVLDPTTT 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,054,740
Number of Sequences: 27780
Number of extensions: 470593
Number of successful extensions: 1478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3599888010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)