Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0094
         (1287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.20 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   3.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   3.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   3.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 410  PKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYG 267
            P  Y+PS  +   +L+     G  + P +G W++    ++  P+++YG
Sbjct: 956  PNFYMPSEPKAPMILVGP---GTGIAPFRGFWHHRLAEIKRRPDLEYG 1000


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 296 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 186
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 504 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 543


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 296 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 186
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 504 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 543


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 296 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 186
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 130 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 169


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 77  PRPPNSCSPGDPLVLERPPP 18
           PR P    PGD  + +RP P
Sbjct: 913 PRSPGRAWPGDSDIRQRPIP 932


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,502
Number of Sequences: 438
Number of extensions: 5660
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44183184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)