Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0093
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    31   0.019
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   8.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 756 VHSAPLVHSGPVVHTASLYHATPLVHSLLSCTPYTLHQHTT 878
           V+S P  H   + H  S  HATP  H   + TP+  HQH+T
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPH--HQHST 446



 Score = 29.9 bits (64), Expect = 0.032
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 702 VHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATPLVHS 836
           V+STP  H   + H    +H+ P  H      T    H+TPL HS
Sbjct: 408 VYSTPGPHHHTMGHGHSHIHATPHHHHSHAA-TPHHQHSTPLAHS 451



 Score = 25.4 bits (53), Expect = 0.70
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 87  GHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP 248
           GHGH  S      H   SH AT H+     H+ P+   + P     G   H  P
Sbjct: 420 GHGH--SHIHATPHHHHSHAATPHH----QHSTPLAHSSYPAAIQIGHTPHHHP 467


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 363 HVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHN 542
           H+ D  P   E  Y      T  H+   ETR     KG   + +P GS+R    + D+ N
Sbjct: 166 HIRDVGP---EDGYKTYQCRT-KHRLTGETRLS-ATKGRLVITEPVGSVRPKFPSMDNIN 220

Query: 543 GFN 551
           G +
Sbjct: 221 GLS 223


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 130 SWRTMLWEDTAWPWPSS 80
           SW T++W D+   W  S
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 DHVEDHAPAKYEFSYSVEDP 419
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 DHVEDHAPAKYEFSYSVEDP 419
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 53 NRADYSNFEEHVEM 12
          N A++SNFE+ V M
Sbjct: 26 NAANFSNFEDRVTM 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,481
Number of Sequences: 438
Number of extensions: 5390
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)