Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0092
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    28   0.94 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   0.94 
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   2.9  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   8.8  

>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 459 RSLATKDSKNELTHTHNPLSSRRIFSVGRVS 551
           R+ ++  +KN L  + NP+S++R+ S+ RV+
Sbjct: 355 RATSSWSTKNSLVFSSNPISNQRLSSLNRVA 385


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 251  FHYKNVYLPAVLEPWAWSHRLILVRAFYLGHDNSNDCKMQGYTSLRILSIH 403
            F++   +   V+EPW +S   I+    +  + NS+D      T + +  +H
Sbjct: 1677 FNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNINSDDIAQISLTPMMVTDVH 1727


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 447 SSSNRSLATKDSKNELTHTHNPLSSRRIFSVGR-VSDPVVDSAKHYP 584
           S  NRSLA    KN+    + PL    I SV    S+PVV   +  P
Sbjct: 293 SMLNRSLANNSQKNKKRTPNKPLQESSINSVKEGESNPVVKRKRGRP 339


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 435 PVTPSSSNRSLATKDSKNE--LTHTHNPLSSRRIFSVGRVSDPVVD 566
           P T + SN + +T  S  +  LTH   PLS+   F  G+   P ++
Sbjct: 25  PTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQHGQTRLPPIN 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,919
Number of Sequences: 5004
Number of extensions: 50690
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)