Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0092
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544...    29   3.0  
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904...    29   3.9  
12_02_0720 - 22510996-22512949,22513752-22514533                       28   5.2  
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930...    28   5.2  

>04_04_0137 -
           23053148-23053798,23053911-23054146,23054268-23054458,
           23054587-23056010
          Length = 833

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 387 GFSRSINGAFRYLPQAPVTPSSSNRSLATKDSKNELTHTHNPLSSRRIFSVGRVSD 554
           G S S +G  R    APVTPS  N++ +    +   T ++   SSR       VSD
Sbjct: 264 GVSPSPSGRSRRRSSAPVTPSEKNKAASPYSPQCPRTPSNRERSSRAHSPSSSVSD 319


>12_02_0388 -
           18486957-18487016,18487286-18489418,18489985-18490484,
           18490728-18490899
          Length = 954

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 335 DKTLLLVSNDATMPMVPIPQADKHFCNEIRT*HVFVYASQSEAIKSCDKKIYILICENRD 156
           D  L +V ++       + Q   H+CN  R   V    +Q  AI     K+ +LI +N D
Sbjct: 487 DMALWIVGDEGREKNKWVVQTVSHWCNAERILSVGTEMAQLPAISEDQTKLTVLILQNND 546

Query: 155 --GALIGQLLLY 126
             G+ +  L  +
Sbjct: 547 LHGSSVSSLCFF 558


>12_02_0720 - 22510996-22512949,22513752-22514533
          Length = 911

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 203  LLLHFGRHTRKRVMYVFHYKNVYLPAVLEPWAWSH--RLILVRAFYLGHDNSNDCKMQGY 376
            L +H G    + + Y FH  +  +P+  +P A  H  RL L+   ++   + ND  ++  
Sbjct: 819  LTIHRGACAFRSLKY-FHLYSYMMPS-FQPGAMPHLERLCLLIMTFIVRGDLNDLGLENL 876

Query: 377  TSLRILSIH 403
             SLR ++IH
Sbjct: 877  HSLRHVTIH 885


>09_06_0257 +
           21891523-21891578,21891911-21892421,21893021-21893092,
           21893571-21893875,21894085-21894196,21894514-21894750,
           21894933-21895640
          Length = 666

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 390 FSRSINGAFRYLPQAPVTPSSSNRSLATKDSKNELTHT 503
           F+  I+  F YLP   V   S+NRS   KD +  +T T
Sbjct: 89  FALFIDPFFYYLPLVHVLDESTNRSCIAKDRRLSITIT 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,314
Number of Sequences: 37544
Number of extensions: 308643
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)