Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0092
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25179| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   7.0  
SB_56083| Best HMM Match : DUF1620 (HMM E-Value=5.2)                   28   7.0  
SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)                     27   9.2  
SB_38661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_25179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 453 SNRSLATKDSKNELTHTHNPLSSRRIFSVGRVSDPVVDSAKHYPC*GQC*QHS 611
           S RSLA++     +T+TH    +  +   GR S  V+D   H      C  HS
Sbjct: 109 SRRSLASRRDARAITNTHQSRKATLLGYRGRWSSSVIDRPLHTQAGASCRVHS 161


>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 453 SNRSLATKDSKNELTHTHNPLSSRRIFSVGRVSDPVVDSAKHYPC*GQC*QHS 611
           S RSLA++     +T+TH    +  +   GR S  V+D   H      C  HS
Sbjct: 196 SRRSLASRRDARAITNTHQSRKATLLGYRGRWSSSVIDRPLHTQAGASCRVHS 248


>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 157 SRFSQINIYIFLSHDFIASLWEAYTKTCY----VRISLQKCLSACGIGTMGMVASFDTSK 324
           S +S IN+   +  D   S W  +   CY    + +S ++  SAC + + G+V+  +  +
Sbjct: 249 STYSPINVNYAVLGDVCGSGWNYFRGYCYKTSDICLSWKRAQSACAVLSSGLVSVHNHEE 308

Query: 325 SV 330
           +V
Sbjct: 309 NV 310


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -3

Query: 615 TGSAANTGPSKGSALQNLPPDRKRDPLKRFGENSVGYVYGLIHSSSPSLQAI 460
           +G   +  PS+ S ++++ P R R P     +N++  V   +H  +  LQ +
Sbjct: 406 SGFRRSVSPSRASRMRSMSPTRARSP--AMSDNALATVNSCLHKRNLQLQEL 455


>SB_56083| Best HMM Match : DUF1620 (HMM E-Value=5.2)
          Length = 287

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 387 GFSRSINGAFRYLPQAPVTPSSSNRS 464
           G + SI+ AFR +P+ P+ PS+S  S
Sbjct: 193 GLADSISFAFREVPRTPLPPSTSKSS 218


>SB_37630| Best HMM Match : rve (HMM E-Value=4e-24)
          Length = 442

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/97 (23%), Positives = 42/97 (43%)
 Frame = +1

Query: 196 HDFIASLWEAYTKTCYVRISLQKCLSACGIGTMGMVASFDTSKSVLSRPRQFQ*LQDARL 375
           H ++A++ + +TK CY    +Q   S  G   + ++++F T   +   P++     D  L
Sbjct: 207 HKWVANIIDHHTKFCY----MQPIYSKTGEEVLSVISTFCT---LYGYPKKLN--TDNGL 257

Query: 376 YVITDSLDPLMVLLGTYLKHRSPRPHQTDRLQRRTRR 486
                 ++     +G    H SPR   T  L  R+ R
Sbjct: 258 EFKNRLVEAFAEKIGIQFSHCSPRTPTTQGLVERSNR 294


>SB_38661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +3

Query: 375 IRHYGFSRSINGAFRYLPQAPVTPSSSNRSLATKDSKNELTHTHNPLSSRR 527
           I H G +R +    R+    P  PSS  R     DS  EL     P+   R
Sbjct: 18  ICHAGTTRDLQWLLRHTGSGPAQPSSITRLPKDDDSMEELVDKPAPMFPMR 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,913
Number of Sequences: 59808
Number of extensions: 380741
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)