Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0092
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    30   1.5  
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132858-10|CAD54159.1|  151|Caenorhabditis elegans Hypothetical...    27   8.1  

>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 193 SHDFIASLWEAYTKTCYVRISLQKCLSACGIGTMGMVASFDTSK 324
           S D    +W+A    C   I+ Q  + +CG    G +  F T K
Sbjct: 71  SGDLTVKIWDAELGNCLYTINHQTPMKSCGFSYSGNLVCFTTQK 114


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -3

Query: 612 GSAANTGPSKGSALQNLPPDRKRDPLKRFGENSVGYVYGLIHSSSPSLQAIGLMR 448
           G     G +   AL+ L    K+  +   G  S+G ++G +++++P ++A+G M+
Sbjct: 556 GGGGARGAAHAGALRALI--EKKVQIDMVGGTSIGALFGSLYATTPDIRAVGRMK 608


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -3

Query: 612 GSAANTGPSKGSALQNLPPDRKRDPLKRFGENSVGYVYGLIHSSSPSLQAIGLMR 448
           G     G +   AL+ L    K+  +   G  S+G ++G +++++P ++A+G M+
Sbjct: 556 GGGGARGAAHAGALRALI--EKKVQIDMVGGTSIGALFGSLYATTPDIRAVGRMK 608


>AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK105.8 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -3

Query: 138 IVTLLILILTASNLIFTSRYIWFYIKLIFMSHRHS*FL 25
           I+TL+ +I T   +++ S  ++FY ++++M H H  F+
Sbjct: 172 ILTLIFMIFTF--VLYCSLILYFYFQILYMLHGHRKFM 207


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 212 HFGRHTRKRVMYVFHYKNVYLPAVLEPWAWS 304
           H+   +R + +  + Y N YL     PW WS
Sbjct: 245 HYDITSRPKSLSSYMYSNKYLGTTAAPWYWS 275


>AL132858-10|CAD54159.1|  151|Caenorhabditis elegans Hypothetical
           protein Y113G7A.16 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 411 AFRYLPQAPVTPSSSNRSLATKDSKNELTHTHNPLSSRRIFSVGRVSDPVVDSAKHYPC* 590
           AF+ +   P   SSS RS  T     E +H H       + +VG    P V SA      
Sbjct: 22  AFKPVTNCPGN-SSSGRSSPTGQGGPEASHYHGNRRQSTVITVGVDKLPTVPSAPSTVRK 80

Query: 591 GQC*QHSRF 617
             C Q  +F
Sbjct: 81  SSCVQEQKF 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,406
Number of Sequences: 27780
Number of extensions: 281293
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)