Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0091
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    29   0.43 
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    27   2.3  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    26   3.0  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   5.3  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    25   5.3  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    25   5.3  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   7.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   9.3  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   9.3  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   9.3  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   9.3  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   9.3  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   9.3  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   9.3  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   9.3  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 167 PAPVLPETEMEDARIIFIETLIIRYNLEE*LAMKCQVGNGSQQPTIAQLSLL 12
           PA   P+ +++D +II I  L + Y L+    +  ++G G    TIA  SLL
Sbjct: 378 PASFSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLL 429


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -1

Query: 383 RQFGHLVHFGDAAGEVLHGLAGRASLEGFVRSVEFRICLLE*STPELVRLGRVEEHQFPS 204
           +QF +L+H        +  LAG  ++ GF     F    L  S P +   G++++     
Sbjct: 5   QQFRNLLHPAMKGARNISILAGGGTMRGFPTRNPFNTATLYSSLPTMNIFGQMQQ----- 59

Query: 203 VRWETVVDDH 174
           VRW+T  +++
Sbjct: 60  VRWKTYGNEY 69


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 252 SALLEKAYAKLHGSYEALKGGSTCEAMEDFTGGVTEMYEMSELPPNFYTILLKAYE 419
           SAL E + + L  SY  L      E  ++    + + YE++E  P FY   L+ ++
Sbjct: 193 SALAELSISFL--SYSILSHYGALEHWKNMLSLLLQSYELAETEPEFYASFLELFK 246


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 126 HNLHRNSDH-QVQLGRITCDEVSSWQRQPTANNRPTLLV 13
           +N+  NS+  Q   G ++C  V  W   P  +NRP+ L+
Sbjct: 175 YNVDYNSELIQQYAGSVSC-HVLDWMNPPDDDNRPSWLI 212


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 196 QRTEGNWCSSTRPRRTSSGVLYSRRHMRNSTDRTKPSREARPARPWR 336
           +++E  +     PRR S  VLY R H +  ++     R  R  +  R
Sbjct: 34  KKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQR 80


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 196 QRTEGNWCSSTRPRRTSSGVLYSRRHMRNSTDRTKPSREARPARPWR 336
           +++E  +     PRR S  VLY R H +  ++     R  R  +  R
Sbjct: 34  KKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQR 80


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 30   DCWLLAAVANLTLHRKLFFQVVPDDQ 107
            D W   A  N T++R + F+ VPDD+
Sbjct: 1220 DIWSKVASNNTTIYRHI-FRCVPDDE 1244


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 443 TAAHKRVPLVRLQQDRVEVWRQFGHLVHF 357
           T+  KR+ +  +   R+ +WRQF ++V +
Sbjct: 107 TSTPKRLSISSMDPARIHLWRQFCNVVGY 135


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 223 STRPRRTSSGVLYSRRHMRNSTDRTKPSREARPARPWRTSPAAS 354
           ST     S   L S  H++  T  T  S    P+RP  T PA+S
Sbjct: 222 STEKPLLSVSALSSSSHLQ-PTSATSSSSRLYPSRPAPTPPASS 264


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 509 VRVPPDEPRRSLRLEDVGVGL 447
           +R+ PD+  + L + D G+G+
Sbjct: 65  IRITPDKENKILSIRDTGIGM 85


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 339 FTGGVTEMY-EMSELPPNFYTILLKAYERNSLMGCSIE 449
           F  G TE   E   LP N Y++ +         GCSIE
Sbjct: 402 FAHGYTEADGESHSLPENVYSVFVHQRPDIQFRGCSIE 439


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 PTYRGKLVFLHSAEANEFWSALLEKAYAKLHGSYE 299
           PT+  +L+ +++ +   FW     K  A++  +YE
Sbjct: 79  PTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYE 113


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 388 FGGSSDISYISVTPPVKSSMASQVEPPLRASYDPWSFAYAFSSRALQNSF 239
           F G + + Y      + +S A  +EP   + YD  S AY   + A++ +F
Sbjct: 470 FNGETVVEYEDAIGHIFASTAKTLEPSPVSPYDESSDAYKKLAGAIRYTF 519


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +3

Query: 264  EKAYAKLHGSYEALKGGSTCEAMEDFTGGVTEMYEMSELPPNFYTILLKAYERNSLM 434
            E+    L+     ++GGS    + D    +      ++   N  T L+K Y +NS++
Sbjct: 908  ERMIDLLYNEPAKVEGGSGSRCLRDNLNDLKAQVSANQKGINLITSLIKEYGKNSVL 964


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 182 RRPSPNVPRETGVPP 226
           RRPS N+P +  +PP
Sbjct: 243 RRPSSNIPAQKPIPP 257


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 343 VKSSMASQVEPPLR-ASYDPWSFAYAFSSRALQNSFASAEWRNTS 212
           V+S  +S    P+R  S + WS   + S ++ Q S + +   NTS
Sbjct: 477 VRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQRSVSMSSLNNTS 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,401
Number of Sequences: 5004
Number of extensions: 47263
Number of successful extensions: 197
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)