Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0091
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.48 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 455 PPHPQGGDSGGAHPGARVLRDPGQV 529
           PP+P  G   G  PGA   ++P Q+
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQM 63



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 188 PSPNVPRETGVPPL 229
           P PN+   +G+PPL
Sbjct: 419 PIPNMSNMSGMPPL 432


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 147 FWQYGRWVDVVIDDRLPTYRG 209
           +W+ G W  + +   L TY+G
Sbjct: 195 YWKSGTWDIINVPAYLNTYKG 215


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 449 ARPPHPQGGDSGGAHPGARVLRDPGQ 526
           ++PPH Q       HP A+    P Q
Sbjct: 807 SQPPHQQLHHHQSTHPQAQAQAQPQQ 832


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 521 PGHGVRVPPDEP 486
           PG+GV +P D P
Sbjct: 421 PGNGVIIPDDPP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,082
Number of Sequences: 438
Number of extensions: 3548
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)