Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0090
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    27   2.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.0  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   8.0  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 320  IKRRIFLKFIPKLSQFVFEVKLPYRRWKKIYRHIFR 213
            +K  I L +IP L+  + E+ + Y   +K+ RHI +
Sbjct: 1750 VKTMIDLGYIPTLTNAISEIDMNYPVSRKVVRHILK 1785


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 662 QFRPKEKAPPKKATSARVFGRKLVN 588
           +FR K  A P   T+ R++G+ +VN
Sbjct: 137 KFRKKNNAEPGSGTACRIYGQLVVN 161


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 379  IECNY*NAYSSWINDHDS*VLSTLIPQINHFSHQHYII 492
            +ECN     S   +D ++ V + L+ Q N  SH++ I+
Sbjct: 1584 LECNRFKKMSQDQSDQENFVAAALLSQKNELSHENSIL 1621


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 261 ETSLSALEKNLPSHFSVTRHFFPLRAICFVFMS 163
           E+  SA E  L   + +T+H  P  ++C+ F+S
Sbjct: 164 ESYSSASESPLKPKYRLTKHTQPCTSVCWNFLS 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,110
Number of Sequences: 5004
Number of extensions: 50999
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)