Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0090
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 436 VLSTLIPQINHFSHQHYIIISNR*SK*YRLIVPQLSTFNTFR*AVHAVRVPFTSFLPNTL 615
           +L T+I   +  ++ ++    NR    Y LI P +  F      +H + +PF SF+   L
Sbjct: 305 ILMTVIFVFDCLTNGYWPFAENRKRLAYFLIAPLVFAFILMSSGIHYLILPFESFIYARL 364

Query: 616 ALV 624
           AL+
Sbjct: 365 ALL 367


>AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical
           protein Y34B4A.8 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 677 SVANSQFRPKEKAPPKKATSARVFGRKLVN 588
           S++   FRPKEKAPP  + +    G  L+N
Sbjct: 446 SISPRSFRPKEKAPPPPSQTPSTSG-DLIN 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,285,490
Number of Sequences: 27780
Number of extensions: 274054
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)