Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0089
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.0  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    26   4.0  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   4.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.0  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   7.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   7.0  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   9.2  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -1

Query: 428 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 252
           K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + 
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 251 N---NDAQITRLLK 219
           +   N   + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 126 GEYVSCSSFSAFLVDFNERFLNSLTYRKAFSF 221
           GEY +  SF   + D N+ F+N+ TY    SF
Sbjct: 202 GEYTTLESF---VKDLNQMFINAKTYNAPGSF 230


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -1

Query: 521 DYKYGESAALNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 357
           + ++G +A +++ LIE +  + +++ +I + P+D +   Q+Q   +  + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
 Frame = -1

Query: 560  DKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 384
            D   K+   +   + K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+ 
Sbjct: 836  DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894

Query: 383  -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 243
                          K+LE  +Q +++   +L++   K+  +  +++  S+    K+    
Sbjct: 895  DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954

Query: 242  AQITRLLKGESLSVSEAI 189
             +I+  LK E++S S+AI
Sbjct: 955  EEISN-LKEENMSQSQAI 971


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 382 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 281
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 275 NMNVNKIFNNDAQITRLLKGESLSVS 198
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
 Frame = -1

Query: 506 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDPKT-LETAQ-Q 357
           E  A  + L+ I + GD   ++        V LPKDK G+   +EAL    T  E A  Q
Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572

Query: 356 SMYSTEVDLYLPKF 315
            +    +DL L  F
Sbjct: 573 GVGKLNLDLDLGLF 586


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 367 RLSKACIAPKSICIFPNSKLKRRRISKMF 281
           RLS  C   K    F     KR+R+SK F
Sbjct: 352 RLSDVCFEEKVYTDFSKKGSKRKRVSKKF 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,976
Number of Sequences: 5004
Number of extensions: 42817
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)