Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0089
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                     101   4e-22
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      97   8e-21
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      92   4e-19
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 36   0.037
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.037
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        31   0.60 
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        27   9.7  
SB_1678| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score =  101 bits (243), Expect = 4e-22
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
 Frame = -1

Query: 638 AIYFKGAWSSKFDERMTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKG 459
           A+YFKG+W   F+   T    F  +  + I+V  MY+  +++Y ES+ L  Q++E+PY G
Sbjct: 165 AVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFRYLESSTLGCQIVELPYAG 224

Query: 458 DQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQSM---YSTEVDLYLPKFKIETETNLK 288
           ++ S++V+LP + DG+ +L+ +L + +TL+ A  S+   +  EV++ LPKF +  E +L 
Sbjct: 225 EKLSMVVLLPNEVDGLGKLESSL-NKETLQEAMTSLRNSHPEEVEVTLPKFTLTQEFSLG 283

Query: 287 DVLSNMNVNKIFNNDAQITRLLKGESLSVSEAIQK 183
           + L  M  + +F+        +    L VSE + K
Sbjct: 284 ETLKGMGASDLFSPGKADLSGISAAPLVVSEVVHK 318


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 47/155 (30%), Positives = 94/155 (60%), Gaps = 3/155 (1%)
 Frame = -1

Query: 638 AIYFKGAWSSKFDERMTSDRDFYV--SKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPY 465
           A+YFKG W  +F E  T    F+V  S +  I+V MM ++    +   A +  +++E+PY
Sbjct: 133 AVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKVNFYYDADIKCRVVELPY 192

Query: 464 KGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQSMYSTEVDLYLPKFKIETETNLKD 285
            GD ++++++LP++  GI  L++++ D + +E  ++ M +T V++ +PKF++  +  L+ 
Sbjct: 193 SGDDTAMVIILPEEPSGIFSLEKSI-DVEIMEKWRRLMINTTVEVSIPKFRLSQKLELRS 251

Query: 284 VLSNMNVNKIFNN-DAQITRLLKGESLSVSEAIQK 183
           +L ++ V+ IF++  A ++ +   + L VS AI K
Sbjct: 252 LLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIHK 286


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
 Frame = -1

Query: 638 AIYFKGAWSSKFDERMTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKG 459
           AIYFKG W   F +  +   +F  +    ++V MM+++  +KY  S     +L+E+PY  
Sbjct: 128 AIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFKYLHSDKYKCKLLELPYVD 187

Query: 458 DQSSLIVVLPKDKDGITQLQEALKDPKTLE--TAQQSMYSTEVDLYLPKFKIETETNLKD 285
            Q S+++VLP + +G+ + ++ L   K  +   +  S    +V++Y+PKFK+ +E  L +
Sbjct: 188 TQLSMVLVLPDETEGLARFEQDLTHDKMTDIFNSVSSQRPADVEVYIPKFKMTSEFKLNE 247

Query: 284 VLSNMNVNKIFNN-DAQITRL-LKGESLSVSEAIQK 183
            L  + + K+F+   A  T + L  E L VS  + K
Sbjct: 248 ALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHK 283


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -1

Query: 455 QSSLIVVLPKDKDGITQLQEALKDPKTL-ETAQQSMYSTEVDLYLPKFKIETETNLKDVL 279
           + +L V +PK  +G+T +  +L+  +TL +T +  ++ T  +LYL   K+E E  L+  +
Sbjct: 587 EETLYVAVPKLSEGVTLVPGSLRVGETLQDTNRYDVFKTYEELYLS--KVEREDRLEQGI 644

Query: 278 SNMNVNKI 255
            + N+ K+
Sbjct: 645 QSENMRKL 652


>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
 Frame = -1

Query: 455 QSSLIVVLPKDKDGITQLQEALKDPKTL-ETAQQSMYSTEVDLYLPKFKIETETNLKDVL 279
           + +L V +PK  +G+T +  +L+  +TL +T +  ++ T  +LYL   K+E E  L+  +
Sbjct: 38  EETLYVAVPKLSEGVTLVPGSLRVGETLQDTNRYDVFKTYEELYLS--KVEREDRLEQGI 95

Query: 278 SNMNVNKI 255
            + N+ K+
Sbjct: 96  QSENMRKL 103


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/87 (24%), Positives = 43/87 (49%)
 Frame = -1

Query: 602  DERMTSDRDFYVSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKD 423
            +E+     D Y+S  K +KV  + + GD K  E     A +I++  +  +SS +  + ++
Sbjct: 780  EEQYRVVEDKYLSAQKELKV--LNEEGDNKAFEQLQTEASVIQMKVEEVESSYMDAVDRE 837

Query: 422  KDGITQLQEALKDPKTLETAQQSMYST 342
            KD   QL++  +  + L+   + +  T
Sbjct: 838  KDLAGQLEDEREKNQFLQMDNEELKKT 864


>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -1

Query: 581 RDFY-VSKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQ 405
           RD + +S+D+ +++    +R          L  ++ E  +K +  SLI +  K K+ +++
Sbjct: 474 RDLHKMSEDEEVRLKREQERIQNYLTHIERLATEIDESAHKINTDSLIKIKWKMKETVSE 533

Query: 404 LQEALKDPKTL 372
           L +ALK+  TL
Sbjct: 534 LMQALKEIPTL 544


>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 504 LSIFIIAAFIHHGYFDCF 557
           LS++++   +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -1

Query: 566 SKDKTIKVPMMYKRGDYKYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQ 399
           S+  +I+       GD  Y E+A +N  L E     D   L+ V  KD     +L+
Sbjct: 261 SRSNSIEAGEFVANGDIGYNEAAGMNGSLSESSEDRDHPELMRVTIKDGSMAEELE 316


>SB_1678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 123 YGEYVSCSSFSAFLVDFNERFLNSLTYRKAFSF*KARNLSI--VVEYFI 263
           YG Y   S F +  +DF  +    +++++A    K  NL    V EY I
Sbjct: 23  YGRYCFASRFPSLFIDFFNKMSYHISFQRAVGLVKWPNLEYPDVYEYLI 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,126
Number of Sequences: 59808
Number of extensions: 308609
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)