Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0088
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 31 0.15
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 29 0.81
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.9
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.3
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 4.3
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 4.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 4.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.7
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.7
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 5.7
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 25 7.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.6
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 7.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.6
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.6
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 7.6
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 10.0
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 25 10.0
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 10.0
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 10.0
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 10.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 10.0
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 10.0
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 473 PALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPI 592
P +E+ L+ D+K R +T G PQ+ PN SP+
Sbjct: 320 PRMETLLALFDAKNKRNLTVRAGTPQSSPNFNPAMRRSPV 359
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 28.7 bits (61), Expect = 0.81
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 200 GVVHVSTDSTLYSLWLNIVLDSKADILGNWIGDVTTQDNMNFKIESTQTK 349
G++ + D+ + LN V+ ++DI+GN I + +DN + ++TK
Sbjct: 178 GIMELLKDNKISVAGLNAVVLGRSDIVGNPISYLLRKDNATVTVCHSKTK 227
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 464 NPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLNTD 619
+P P + SP ++ + + FV S+ + +P+ +Q++TP+ PL D
Sbjct: 287 SPTPEVVSPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPA-FSHDSPLTID 337
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +2
Query: 320 NFKIES-TQTKINPGPATAVRFFV-QYNTLNKAPRLLAIRLNGREICNANNPQPA--LES 487
NF ++ + + I+ P V+ ++ Q T ++A +L+ + N++ P+ L
Sbjct: 181 NFSSKAGSSSPISVSPLKNVKAYISQSPTHSEASSVLSSEEEEENVINSSKSVPSFDLHD 240
Query: 488 PLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
P S K ST P R TP PIP+ RP
Sbjct: 241 PFSQTFGKE---CPISTAPPVLNIGDRSLETPPPIPSPRP 277
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 503 DSKPNRFVTASTGRPQTQPNLRQQTTPSPI 592
D KPN +ST + + P L TTP +
Sbjct: 115 DGKPNDIELSSTSKTENDPPLSLHTTPDDL 144
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 305 TQDNMNFKIESTQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALE 484
TQ N F +E +Q K N A F V+Y A +L+ E+ + + + +
Sbjct: 165 TQQNNQFVMEPSQNKGNVNDANF--FEVEY-----ARNENMNKLSSSELISDDLLEDEIM 217
Query: 485 SPLSSGDSKPNR 520
PLSSG+S P +
Sbjct: 218 KPLSSGESLPKK 229
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +2
Query: 401 LNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQ-QT 577
L+ +P L + N N A +SP + KP + R +T PNL +
Sbjct: 154 LDASPSFLKKPAEYTPLANRQNQNLAFDSPTEALPPKPTTPWRRNGFRSKTTPNLNSGKE 213
Query: 578 TPSPIPTSRPLNTDL 622
TPS S L L
Sbjct: 214 TPSSYKASARLMEQL 228
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 513 RTDSSQLRLVDPKHNPI*DNRLLHPLYQQVD 605
R DS ++L+ PK N + L+ L+ Q+D
Sbjct: 606 RIDSETIKLLQPKSNSFSTSSLIQSLFLQLD 636
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 449 ICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTP-SPIPTSRPL 610
I ++N P L P + P +PQ QP +Q P P P +PL
Sbjct: 142 ILSSNQPIQQLPLPNQASPYIPVPLQQQQQSQPQQQPQQQQHQQPQQPQPPQQPL 196
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 455 NANNPQPALES--PLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
N++N Q + + P SS + PN ++ RP + + +P P +RP
Sbjct: 25 NSSNGQTSTSAGHPSSSSSTLPNYAASSLNSRPVSSSGSGNAYSQAPYPPARP 77
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 236 NIRCCQ---WRHGQRHTTSQPLTPAFHTRKHSGMVRLECFGP 120
N++C + + HG H S T A+H ++H+ + F P
Sbjct: 134 NLKCDKVIFYVHGGAHYLSTVRTNAYHIQRHTAALGARTFAP 175
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 408 LFKVLYWTKNLTAVAGPGLIFVCVLSILKF 319
L+ +L TKNL VAG L F SIL+F
Sbjct: 258 LYMLLKNTKNLALVAGKDLYFGVGGSILEF 287
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 189 GGGMALSMSPLTAPYILYGSISFWIVKLIYLG 284
GG + LT + L+ +S WI+ L++LG
Sbjct: 2173 GGSLLAPWKMLTIAFFLF--LSMWIIMLMFLG 2202
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 125 QSTPISPCPNVFEYETPGSEAGRWYGVVHVSTDS---TLYSL 241
Q+TP++P +F Y +P YG D+ T+YSL
Sbjct: 172 QNTPVTPSRKIFHYLSPRDRNKSSYGKKAQYQDNPNRTIYSL 213
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 467 PQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIP 595
P P L G +R + +GRP+ P+ + PS +P
Sbjct: 331 PAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLP 373
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 321 FMLSCVVTSPIQFPSISALLSRTILSHREYKVLSVET 211
+ L+ + + +QF S LS I++HRE +++ + T
Sbjct: 176 YFLASLTSRSLQFEGGSVGLSNRIITHRELEMVILST 212
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 506 SKPNRFVTASTGRPQTQPNLRQQTTPSPIP 595
S+P+ V PQT PN+ + +TP +P
Sbjct: 603 SRPSSKVNLVDTYPQTIPNVSKPSTPIDVP 632
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +3
Query: 483 RALCLRAIQSRTDSSQLRLV 542
+ LC RA+ +RTD++ +R++
Sbjct: 226 KTLCARAVANRTDATFIRVI 245
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 547 PNTTQSKTTDYSIPYTNK*TLEY*LEDTRN*KTANS 654
PNT +K DY Y NK + L D+ + T +S
Sbjct: 132 PNTYYAKVRDYIARYANKEDADITLNDSSDDDTMSS 167
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 10.0
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 467 PQPALESPLSSGDSKPNRF--VTASTGRPQTQPNLRQQTTPSPIP---TSRPLNTDLR 625
P A S LS DSK +TA G PQ+ P+ +P P TSR + +R
Sbjct: 320 PSRAAASLLSILDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTSRRRHDQIR 377
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 482 ESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTP 583
ESP++ K T+S RP +P L+ Q +P
Sbjct: 421 ESPMTFLQKKMAALPTSSPVRPMLKPTLQLQNSP 454
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 50 RMVQIKMLGFVTVVLVLALSVHTQDQSTPIS 142
R+ + KM+GF VV++ LS ++TP+S
Sbjct: 75 RVSKRKMVGFAVVVVLHVLSKGLLGKATPLS 105
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 544 TPNTTQSKTTDYSIPYTN 597
TP TT + TT SIPYT+
Sbjct: 466 TPLTTTNCTTSTSIPYTS 483
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 203 VVHVSTDSTLYSLWLNIVLDSKADILGNWIGDVTTQD-NMNFKIES 337
VV +T +L LN V S ++LG WIG + T++ F ES
Sbjct: 148 VVGTTTFFSLLLYTLNTV--SAQELLGRWIGQLMTKNTGFQFVFES 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,532
Number of Sequences: 5004
Number of extensions: 63490
Number of successful extensions: 225
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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