Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0088
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0089 - 13300902-13301645 35 0.052
07_03_0091 + 13312904-13313647 35 0.068
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 31 1.1
02_05_0593 - 30217432-30218232 30 1.9
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 3.4
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 29 3.4
10_08_0005 + 14030414-14030519,14030612-14030921,14031012-140312... 29 4.5
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 4.5
06_01_1182 + 10150911-10150979,10150984-10151457 28 5.9
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502... 28 5.9
11_01_0066 - 536281-537196,537397-537452 28 7.8
04_03_0613 + 18034727-18036175 28 7.8
02_05_0564 + 30003817-30005778 28 7.8
01_01_0704 + 5434331-5434337,5434480-5434519,5435062-5435134,543... 28 7.8
>07_03_0089 - 13300902-13301645
Length = 247
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 437 NGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
NGR I ++P+PA +P KP T + +P QPN + PSP P +P
Sbjct: 27 NGRVIEAKSDPKPADPNPKPDPTPKPQP-ETKPSPQPNPQPNPQPDPKPSPQPDPKP 82
>07_03_0091 + 13312904-13313647
Length = 247
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 437 NGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
NGR I ++P+PA P KP T + +P QPN + PSP P +P
Sbjct: 27 NGRVIEAKSDPKPADPKPKPDPTPKPQP-ETKPSPQPNPQPNPQPDPKPSPQPDPKP 82
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 464 NPQPALESPLSSGDSKPN-RFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
NPQP P D KP + +P QP+ +Q P P PT +P
Sbjct: 67 NPQPD-PKPSPQPDPKPTPQPEPKQDPQPNPQPDPKQSPQPDPKPTPQP 114
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 281 GNWIGD-VTTQDNMNFKIESTQTKINPGPATAVRFFVQYNTLNK 409
G GD + D +E T+T++N A A + V+Y+T+NK
Sbjct: 80 GKCEGDAIVVMDAFALPVEGTETRVN-AQADAYEYMVEYSTINK 122
>02_05_0593 - 30217432-30218232
Length = 266
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 473 PALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPI 592
PA E+P S+ +SKPN +S P PN PSP+
Sbjct: 175 PAAEAPSSATESKPNSTDASSKHGP---PNAGAHAAPSPV 211
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -1
Query: 229 GAVSGDMDNAIPPPSL*PRRFILENIRA 146
G + GD+++ PPP L P R+ L+++RA
Sbjct: 337 GQIGGDLNSTCPPPPLFP-RYPLQSLRA 363
>01_06_0561 +
30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -1
Query: 436 QSDG*KTRSFVQSIVLDEKSDCRCWPGIDLRLRAFDFEVHVVLRCDIAYPI 284
Q D + + V S+ D + G++ +++ F++ + V CDI YP+
Sbjct: 494 QCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPV 544
>10_08_0005 +
14030414-14030519,14030612-14030921,14031012-14031233,
14031326-14031565,14031727-14031804,14031841-14032036,
14032084-14032265,14032351-14032433,14032526-14032650,
14032762-14032840,14032924-14033092,14033171-14033231,
14033312-14033434,14033552-14033749,14033927-14033995,
14034244-14034320,14034475-14034562
Length = 801
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 296 DVTTQDNMNFKIESTQTKINPGPATAVRFFVQYNTLNKAPRLL 424
DV + K+E IN P+ + FF ++ TLN A ++L
Sbjct: 286 DVDNAPASDSKLEPASVAINLTPSISSAFFPRFRTLNHARKIL 328
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 621 KSVFKGLLVGIGDGVVCCLRLGCVWGLPVEAVTNR 517
K+V + +GIG G+VC L++ C W + E R
Sbjct: 89 KAVLYFVYLGIGSGIVCFLQVSC-WSVTGERQATR 122
>06_01_1182 + 10150911-10150979,10150984-10151457
Length = 180
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 406 VQSIVLDEKSDCRCWPGIDLRLRAFDFEVH 317
++S++L CRCW G+D A + EVH
Sbjct: 7 IRSVLLQRLFLCRCWIGVD--TEAVEAEVH 34
>02_01_0674 +
5020118-5020202,5020301-5020436,5021075-5021140,
5021219-5021290,5021362-5021433,5024242-5024301,
5024494-5024565,5024655-5024720,5024798-5024863,
5024945-5025273,5025713-5025969,5026213-5026484,
5026580-5026715,5026833-5026972,5027051-5027207,
5027476-5027634
Length = 714
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 444 VKFAMQTTRSLP-LRALCLRAIQSRTDSSQLRLVDPKHNP 560
V+ A+ T R+L L +CL ++ R S L+D +HNP
Sbjct: 507 VRVALGTARALEYLHEVCLPSVVHRNFKSSNILLDEEHNP 546
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 443 REICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTS 601
R + A+ P P++ +P S S P T R TP PIPT+
Sbjct: 208 RPLPPASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTA 260
>04_03_0613 + 18034727-18036175
Length = 482
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 26 FL*HTSCLRMVQIKMLGFVTVVLVLALSVHTQD-QSTPISPCPNVFEYETPGS 181
FL H CL ++++ +T V + L VH Q QS + C N+ E+ GS
Sbjct: 408 FLVHYPCLADLKLQYCSGLTDVGIAEL-VHAQKLQSLVVEGCSNISEHAVQGS 459
>02_05_0564 + 30003817-30005778
Length = 653
Score = 27.9 bits (59), Expect = 7.8
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Frame = -2
Query: 609 KGLLVGIGDGVVCCLRLGCVWGLPVEAVT-NRFGFESPEDRGLSRAGCGLFALQISRPFN 433
K L V IGDGV + G+ + + FGF SP RG+ G + +
Sbjct: 353 KLLCVMIGDGVQ-------ILGMAIVTIFFAAFGFMSPASRGMLLTGMIFLYMLLGIVAG 405
Query: 432 LMAKRRGALFKVLY--W--TKNLTAVAGPGLIFVCVLSILKFML 313
A R K W TA PG++FV VL++L FML
Sbjct: 406 YAAVRLWRTLKGTSEGWRSVSWSTACFFPGIVFV-VLTVLNFML 448
>01_01_0704 +
5434331-5434337,5434480-5434519,5435062-5435134,
5435352-5435468
Length = 78
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 77 FVTVVLVLALSVHTQDQSTPISPCPNV 157
FVT VL +++ V Q+Q PISP +
Sbjct: 26 FVTSVLTISIEVQCQEQWFPISPSTGI 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,825,818
Number of Sequences: 37544
Number of extensions: 427187
Number of successful extensions: 1424
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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