Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0088
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 29 2.6
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98) 29 2.6
SB_52469| Best HMM Match : MSSP (HMM E-Value=0.54) 29 3.4
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 29 3.4
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 29 4.5
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_47342| Best HMM Match : VWA (HMM E-Value=0) 29 4.5
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 29 4.5
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) 28 6.0
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06) 28 6.0
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 28 7.9
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 28 7.9
SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41) 28 7.9
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2) 28 7.9
SB_10198| Best HMM Match : MBT (HMM E-Value=0) 28 7.9
SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30) 28 7.9
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 464 NPQPALESPLSSGDSKPNRFVTAST-GRPQTQPNLRQQTTPSPIPTSRP 607
NPQ + + ++ S PN T +T GRP P Q TT + P+S P
Sbjct: 762 NPQGQVTTATTAPSSNPNESTTPTTGGRPGLNPQ-GQVTTATTAPSSNP 809
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 479 LESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIP 595
L SP+ +PN T +T RP+++ + TTP +P
Sbjct: 1213 LRSPIKVNFIRPNPLSTFTTMRPKSKSFTAKATTPDALP 1251
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 461 NNPQPALESPLSSGDSKP-NRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLN 613
N P P + ++P N+ T +P QP + P+ PT++P N
Sbjct: 207 NQPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 258
>SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 248 NIVLDSKADILGNWIGDVTTQDNMNFKIESTQTKINPGPATAVRFFVQYNTLN 406
NI++ + I+GN I TT++N N I T + P P+ + Y+ +N
Sbjct: 58 NIIIVTNITIIGNVIVSNTTKNNTNTIIIITSSSAPPSPSYYHHLYRHYHHIN 110
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 389 QYNTLNKAPRLLAIRLNGREICNANNPQPALES-PLSSGDSKPN-RFVTASTGRPQTQPN 562
+Y T + R+ L GR P+ ++ P + ++P R T RP+T+P
Sbjct: 216 RYLTGRRRGRVTRRYLTGRRRGRVTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPK 275
Query: 563 LRQQTTPSPIPTSRP 607
R +T P P +RP
Sbjct: 276 TRPKTRPKTRPKTRP 290
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 416 RLLAIRLNGREICNANNPQPALES-PLSSGDSKPN-RFVTASTGRPQTQPNLRQQTTPSP 589
R L R GR P+ ++ P + ++P R T RP+T+P R +T P
Sbjct: 229 RYLTGRRRGRVTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKTRPKT 288
Query: 590 IPTSRP 607
P +RP
Sbjct: 289 RPKTRP 294
>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
Length = 506
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 482 ESPLSSGDSKPNRFVTASTGRPQTQPNLRQ--QTTPSPIPTSRPLNTD 619
E LS+ ++ +R+ T + RP++ P Q Q +PSP P++ L+ D
Sbjct: 162 EDLLSTVETSLSRYSTKARSRPKSTPQQSQTLQCSPSPGPSACTLSVD 209
>SB_52469| Best HMM Match : MSSP (HMM E-Value=0.54)
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 203 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 93
+H + PLT KH GM L GPVC+ + + P
Sbjct: 12 KHVSMGPLTTGGPVCKHVGMGPLTTGGPVCKHVSMWP 48
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 203 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 93
+H PLT KH GM L GPVC+ I + P
Sbjct: 275 KHVGMWPLTTGGPVCKHVGMGPLTTGGPVCKHIGMGP 311
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 203 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 93
+H PLT KH GM L GPVC+ I + P
Sbjct: 290 KHVGMGPLTTGGPVCKHIGMGPLTTGGPVCKHIGMGP 326
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 203 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 93
+H + PLT KH GM + GPVC+ + + P
Sbjct: 102 KHVSMWPLTTGDPVCKHVGMWPVTTGGPVCKHVDMGP 138
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 203 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 93
+H + P+T KH GM L GPVC+ + + P
Sbjct: 230 KHVSMWPVTTGGPVCKHVGMWPLTTGGPVCKHVGMGP 266
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 203 RHTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVLKP 93
+H PLT KH GM L GPVC+ + + P
Sbjct: 260 KHVGMGPLTTGGPVCKHVGMWPLTTGGPVCKHVGMGP 296
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Frame = +2
Query: 359 GPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSKPN-RFVTAS 535
G + + + + Y +N + + R+ G E+ P P L S + P + T +
Sbjct: 529 GKSCSPKHYSVYTRVNSYMKWIFDRI-GEEVPTVR-PTPPLTSTAAEPVVTPTTKGKTTT 586
Query: 536 TGRPQTQPNLRQQTTPSPIPTSRPLNT 616
TG P P T P T+RP +T
Sbjct: 587 TGHPTKTPTTTSGPTHPPTTTARPTST 613
>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 1213
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 309 CVVTSPIQFPSISALLSRTILSHREYKVLSVETWTTPYHLPASDPGVSYSK 157
C TSP+ F + L T++S K +S ETW T Y+L S G+ +++
Sbjct: 316 CADTSPLPFLQMD-LGEPTVVSGIATKGMS-ETWCTGYYLSYSRDGLEWTE 364
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 461 NNPQPALE-SPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
+NP P SP S + PN S+ P P+ + PSP P+S P
Sbjct: 471 SNPSPRPHPSPHPSSNPSPNPSPNPSSD-PSPNPSSNPSSDPSPNPSSNP 519
>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
Length = 483
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 446 EICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLNT 616
++ N+P + S+P R T ST R T+ R T P PTSRP+ T
Sbjct: 243 QVTRENSPSTTRRPITTIPTSRPTRLSTPSTRRKTTR---RASTIP---PTSRPITT 293
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 440 GREICNANNPQPALE---SPLSSGDSKPNRFVTAS-TGRPQTQPNLRQQTTPSPIPTS 601
GR N+ P P SP SS + P T+S G P P++ ++ P P+P S
Sbjct: 333 GRSPSNSPRPSPKNSPRTSPRSSPFASPTGSPTSSPVGSPAQSPSVFRRIPPPPLPDS 390
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 470 QPALESPLSSGDSKPNRFVTAS-TGRPQTQPNLRQQTTPSPIPTSRPLN 613
+P ++ + D++P+R T S T + +Q N R T P+ T RP N
Sbjct: 92 RPTNDTARPTNDTQPDRHTTRSQTNKRHSQTNTRYATRPTN-DTDRPTN 139
>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
Length = 713
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 467 PQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTT 580
P+PA E P+ P++F +TGR QP Q+TT
Sbjct: 574 PRPATELPVMRTSGPPSKFSRKATGRLVLQP---QKTT 608
>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
Length = 479
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 467 PQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTP--SPIPTSRPL 610
P P L P + + P R +++ P LR + TP +P P + PL
Sbjct: 100 PTPPLSQPSPASSATPTRVPDSTSPTPAQADGLRHRGTPMQTPSPFNYPL 149
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 512 PNRFVTASTGRPQTQPNLRQQTTPSPIPTSRP 607
P R + T +P P + Q P+P+PTS+P
Sbjct: 498 PQRPGSPPTSQPGGFPGQQMQQHPAPLPTSQP 529
>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
Length = 1736
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 135 QSHHARMFSSMKRRGQRLGGGMALSMSPLTAPY 233
+ HH R + RR RLG L ++PL A +
Sbjct: 1668 KDHHRRRSHNRPRRRHRLGWAQGLHLAPLRADF 1700
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +2
Query: 332 ESTQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSK 511
+S NP P T+ + + L K+P + +N P + SP SS K
Sbjct: 626 QSPTVSFNPTPFTSHMEDMDLDPLLKSPPPIVTPKQRHHSSTSNATSPIVPSPASSDHPK 685
Query: 512 PNR 520
P R
Sbjct: 686 PGR 688
>SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41)
Length = 409
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -2
Query: 360 PGLIFVCVLSILKFMLSCVVTSPIQFPSISALLSR---TILSHREYK 229
P +I +CV S LKF L C +S I+ + S+ L + T L+ R+ K
Sbjct: 357 PAMIRICVTSELKFNLPCFQSSRIRTLNRSSRLFKLHYTNLNRRDVK 403
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 197 YGVVHVSTDSTLYSLWLNIVLDSKADILGNWIGDVTTQDNMNFKIESTQTKINPG 361
YGV +ST +T+ ++ VL + LG GDVT + ++I ++I+PG
Sbjct: 3031 YGVFGISTYNTINTVEEGSVLRLEVQRLGGDFGDVT----ITWRITPGNSQIHPG 3081
>SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)
Length = 393
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 171 VSYSKTFGHGEIGVLWSCV*TDSAKTSTTVTKPSILICTIRKQLV 37
+S S TF GE+ ++W C + KPS C +R+ +
Sbjct: 345 LSGSSTFPEGELLLVWKCSEMKEGNEVVGIFKPSENSCYLRRSQI 389
>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
Length = 753
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +2
Query: 461 NNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIP 595
N P P SPLS T P+ + +TPSP P
Sbjct: 446 NTPSPTSRSPLSDSHKNSPVNTLLKTEAPEVPTSTAAVSTPSPSP 490
>SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30)
Length = 284
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 8 SRRKTIFL*HTSCLRMVQIKMLGFVTVVLVLALSVHTQDQSTPISPCPNVFEYETP 175
+R+ IF+ L ++KML F ++ ++A +V D T N F Y +P
Sbjct: 36 NRKDKIFIRRRLSLTKTKMKMLVFAGLLSLIASAVSEDDDQTMALKYLNQFHYISP 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,889,668
Number of Sequences: 59808
Number of extensions: 486587
Number of successful extensions: 1758
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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