Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0088
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 31 0.57
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.3
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 29 2.3
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 29 2.3
L14331-4|AAA28097.1| 352|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 29 3.0
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 29 4.0
Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical pr... 28 5.3
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 28 5.3
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 7.0
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 28 7.0
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 7.0
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 31.5 bits (68), Expect = 0.57
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +2
Query: 320 NFKIESTQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSS 499
NF ST +I P P T ++ + +APR+ IR+ ++ N P+ + PL +
Sbjct: 320 NFSRSSTSLRI-PTPTTKIQKIQNFFETTRAPRISRIRMGVTDL--VNTPRRPMPHPLFT 376
Query: 500 GDSKPNRFVTASTGR---PQTQPNLRQQ 574
S PN A + P T N +Q+
Sbjct: 377 --STPNNLNAARSENSVFPPTPTNRQQR 402
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/75 (21%), Positives = 32/75 (42%)
Frame = +2
Query: 395 NTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQ 574
N ++ P L G+E + P + ++ D++ ++ ++S P +
Sbjct: 361 NKISSVPSHLPTSNGGKENLRQSTPDEQNNNNNNNNDNEKSKLSSSSLSSPGMGKKPISK 420
Query: 575 TTPSPIPTSRPLNTD 619
P P PT RP+ T+
Sbjct: 421 VAPMPKPTPRPIATN 435
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 428 IRLNGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIP 595
I L E C + +P L PL+ + P R +A PQ + ++PSP+P
Sbjct: 81 IYLKCHEECMKSTGRPGLLKPLAMPMTAPAREASALNTDPQNGSDDVPHSSPSPVP 136
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +2
Query: 392 YNTLNKAPRLLAIRLNGREICNAN--NPQPALESPLSSG---DSKPNRFVTASTGRPQTQ 556
Y+ +P + RL+ N + N QP+ +P+ +G P+ ++S+G +T
Sbjct: 835 YHVKQLSPSNMQHRLDNTTPSNFDFSNVQPSNSNPVPNGRYHPLTPSSMTSSSSGASRTA 894
Query: 557 PNLRQQTTPSPIPTSRPLNT 616
+QQT P P P P+N+
Sbjct: 895 GQGQQQTAPPPRPP--PVNS 912
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 428 IRLNGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIP 595
I L E C + +P L PL+ + P R +A PQ + ++PSP+P
Sbjct: 81 IYLKCHEECMKSTGRPGLLKPLAMPMTAPAREASALNTDPQNGSDDVPHSSPSPVP 136
>L14331-4|AAA28097.1| 352|Caenorhabditis elegans Hypothetical
protein K12H4.3 protein.
Length = 352
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 231 KVLSVETWTTPYHLPASDPGVSYSKTFGHGEIGVLW 124
K + ++T TP+H P S P V + F GE +W
Sbjct: 185 KAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIW 220
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 461 NNPQPALESPLSSG---DSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLNT 616
+N QP+ +P+ +G P+ ++S+G +T +QQT P P P P+N+
Sbjct: 899 SNVQPSNSNPVPNGRYHPLTPSSMTSSSSGASRTAGQGQQQTAPPPRPP--PVNS 951
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 289 DRRCHNARQHELQNRKHADEDQ-SRASNGSQIFRPIQYFEQSSSS--FS--HQIEWT*NL 453
D CH++ +H+L++ + +D S S P+ +F+ SS+S FS H T +
Sbjct: 403 DYYCHDSHEHKLEDNRSSDSTPLPSPSPYSYPSTPLNHFQSSSNSPVFSNNHSKFNTEAV 462
Query: 454 QCKQPAACP 480
C+ CP
Sbjct: 463 TCEAGMLCP 471
>Z81074-8|CAB03043.1| 413|Caenorhabditis elegans Hypothetical
protein F32B6.9 protein.
Length = 413
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Frame = -2
Query: 291 IQFPSISALLSRTILSHREYKVLSV-------ETWTTPYH 193
++FPS+ +L+ +L+ +EY++L W TP H
Sbjct: 150 LRFPSVHSLIESGLLTEKEYQILEAMHAENESSRWITPLH 189
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +2
Query: 338 TQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGD--SK 511
T K+ P A F+ +T + R L ++ E N P + +P S S+
Sbjct: 524 TPRKVLEPPLFAPTRFISSSTPKQ--RALLVQKENLEKTMINQVPPVVNTPPSPQQTASQ 581
Query: 512 PNRFVTASTGR--PQTQPNLRQQTTPSPIPTSR 604
+ T++T R P+ + L+ ++ P+P PT +
Sbjct: 582 LKKTPTSATKRHLPEIEQELKSESVPAPPPTKK 614
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +2
Query: 338 TQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGD--SK 511
T K+ P A F+ +T + R L ++ E N P + +P S S+
Sbjct: 524 TPRKVLEPPLFAPTRFISSSTPKQ--RALLVQKENLEKTMINQVPPVVNTPPSPQQTASQ 581
Query: 512 PNRFVTASTGR--PQTQPNLRQQTTPSPIPTSR 604
+ T++T R P+ + L+ ++ P+P PT +
Sbjct: 582 LKKTPTSATKRHLPEIEQELKSESVPAPPPTKK 614
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +2
Query: 335 STQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSKP 514
S+Q + NP PATA+ + T AP AN L +P+ S
Sbjct: 488 SSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSSGANLVDFDLGAPIKPTSSAS 547
Query: 515 NRFVTASTGRPQTQPNLRQQTTP-SPIPTSRPLNT 616
N + + +L +P P TS P NT
Sbjct: 548 NLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNT 582
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +2
Query: 443 REICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPT 598
R + AN+ +P + S + P RP P R P P+PT
Sbjct: 194 RPLRPANDVKPTMYRRSGSSEDIPQATSATRLARPLAPPPARPAAPPPPVPT 245
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +2
Query: 443 REICNANNPQPALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPT 598
R + AN+ +P + S + P RP P R P P+PT
Sbjct: 196 RPLRPANDVKPTMYRRSGSSEDIPQATSATRLARPLAPPPARPAAPPPPVPT 247
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.0
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +2
Query: 335 STQTKINPGPATAVRFFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSKP 514
S+Q + NP PATA+ + T AP AN L +P+ S
Sbjct: 488 SSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSSGANLVDFDLGAPIKPTSSAS 547
Query: 515 NRFVTASTGRPQTQPNLRQQTTP-SPIPTSRPLNT 616
N + + +L +P P TS P NT
Sbjct: 548 NLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNT 582
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Frame = +2
Query: 380 FFVQYNTLNKAPRLLAIRLNGREICNANNPQPALESPLSSGDSKPNRFVTASTGRPQT-- 553
F T N AP I+ G + P P L +KP T ST R T
Sbjct: 69 FLASETTTNPAPMSAGIQTRGSYANTKSLPVPDLPPSTLKTTTKPVITATRSTARITTTK 128
Query: 554 QPNLRQQTTPSPIPTSRPLNT 616
L P+ T+R ++T
Sbjct: 129 ASTLEPPEAPTKASTARTIST 149
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 473 PALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLN 613
P+ +P S ++ +F +S P Q + Q P+P+ S+P N
Sbjct: 105 PSQYTPASVSTARAPQFHRSSHVTPSQQQRIEQAFGPAPVSQSQPQN 151
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 473 PALESPLSSGDSKPNRFVTASTGRPQTQPNLRQQTTPSPIPTSRPLN 613
P+ +P S ++ +F +S P Q + Q P+P+ S+P N
Sbjct: 105 PSQYTPASVSTARAPQFHRSSHVTPSQQQRIEQAFGPAPVSQSQPQN 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,601
Number of Sequences: 27780
Number of extensions: 364715
Number of successful extensions: 1318
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -