Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0088
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.29 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 200 HTTSQPLTPAFHTRKHSGMVRLECFGPVCELIVL 99
           H     L   FH ++H G   ++ +GP   L+VL
Sbjct: 197 HAEYSMLLVYFHLQRHMGNFLIQVYGPCVLLVVL 230


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 494 SSGDSKPNRFVTASTGRPQTQPNLRQQTTPS 586
           SSGD + +R   + T +P   P  R+  +PS
Sbjct: 548 SSGDDELHRASLSKTPQPPQCPRFRKLDSPS 578


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 286 LDRRCHNARQHELQNRKHADEDQSRASNGSQI 381
           +D     + QH LQNR + ++  S  ++   I
Sbjct: 196 IDPELTESEQHRLQNRLYTNDSTSSKTDDDSI 227


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 286 LDRRCHNARQHELQNRKHADEDQSRASNGSQI 381
           +D     + QH LQNR + ++  S  ++   I
Sbjct: 234 IDPELTESEQHRLQNRLYTNDSTSSKTDDDSI 265


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 423 KRRGALFKVLYWTKNLTAVAG 361
           +RR    ++L WTKN+  V G
Sbjct: 12  ERRHIRRELLRWTKNMVFVVG 32


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 311 DNMNFKIESTQTKINPGPATAVRFFV 388
           D++      +QT+ N GP + VRF V
Sbjct: 583 DSLRGSTTDSQTEDNFGPLSNVRFAV 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,180
Number of Sequences: 438
Number of extensions: 4473
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)