Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0087
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 186 2e-48
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 89 3e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 4e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 82 5e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 70 3e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 56 3e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 7e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 5e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.4
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 5.9
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 186 bits (453), Expect = 2e-48
Identities = 85/95 (89%), Positives = 90/95 (94%)
Frame = -1
Query: 568 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPPERKYSVW 389
SIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAP +MK+KI+APPERKYSVW
Sbjct: 281 SIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVW 340
Query: 388 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 284
IGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 341 IGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 89.4 bits (212), Expect = 3e-19
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -1
Query: 568 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPPERKYSVW 389
SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W
Sbjct: 286 SILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAW 345
Query: 388 IGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 284
+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 346 LGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 89.0 bits (211), Expect = 4e-19
Identities = 44/99 (44%), Positives = 67/99 (67%), Gaps = 6/99 (6%)
Frame = -1
Query: 565 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPP---ERKYS 395
I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+
Sbjct: 335 ISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYA 393
Query: 394 VWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 287
W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 394 SWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.2 bits (194), Expect = 5e-17
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = -1
Query: 568 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPPERKYS-- 395
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA + A S
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 394 VWIGGSILASLSTFQQMWISKQEYDESG 311
VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 69.7 bits (163), Expect = 3e-13
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 13/99 (13%)
Frame = -1
Query: 568 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL------------AP*TMKIK 425
+I DVDIRK LY VLSGG++MY G+ R++KEI L P K+K
Sbjct: 281 TIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLP-NFKVK 339
Query: 424 IIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 311
I P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 340 IEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 56.4 bits (130), Expect = 3e-09
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Frame = -1
Query: 565 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*T--------------MKI 428
+ +D+RK LY N VLSGG+T++ +R+Q+++ + + +
Sbjct: 315 VQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDV 374
Query: 427 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 293
+I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 375 NVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/89 (22%), Positives = 45/89 (50%)
Frame = -1
Query: 565 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPPERKYSVWI 386
+ + ++ ++ L +N +++GG PG+ R+++E+T++ P I + W
Sbjct: 623 LQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWK 682
Query: 385 GGSILASLSTFQQMWISKQEYDESGPSIV 299
G S + F+ ++++EY E GP +
Sbjct: 683 GASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 7e-06
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = -1
Query: 547 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPPERKYSVWIGGSILA 368
+I+ L N V GG +PG R+ E+ +LAP ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 367 SLSTFQQMWISKQEYDESGPSIVHRK 290
L + I++ EY E G +I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -1
Query: 538 KDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPP---ERKYSVWIGGSILA 368
K+LY++ ++ GG +PG A +++ I + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 367 SLSTFQQMWISKQEYDESGPSIVHRK 290
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 391 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 290
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 399 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 304
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -3
Query: 509 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 330
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 329 GV 324
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 332 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 418
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,950
Number of Sequences: 5004
Number of extensions: 42967
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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