Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0087
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             160   1e-41
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  160 bits (388), Expect = 1e-41
 Identities = 76/78 (97%), Positives = 77/78 (98%)
 Frame = -1

Query: 568 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP*TMKIKIIAPPERKYSVW 389
           SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP TMKIKIIAPPE+KYSVW
Sbjct: 56  SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVW 115

Query: 388 IGGSILASLSTFQQMWIS 335
           IGGSILASLSTFQQMWIS
Sbjct: 116 IGGSILASLSTFQQMWIS 133


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 355 FQQMWISKQEYDESGPSIVHRK 290
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,496
Number of Sequences: 438
Number of extensions: 3424
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)