Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0085
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   3.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.6  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   3.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   6.3  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   8.3  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +1

Query: 592 ETEITQK-NQRMES-RKIIYTWLQTSEDVTVTLKLEEKYNKKHFHVLVSPITIKVSYAGR 765
           E + TQ  N+   S RK I T          TLKL  +Y    +HVL +   + V   G 
Sbjct: 105 ERQRTQSLNEAFASLRKSIPTMPSDKLSKIQTLKLAARYIDFLYHVLSNENALDVDLIGN 164

Query: 766 HC 771
            C
Sbjct: 165 VC 166


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 295 LQSSLILGENKYFVIVDARIQEKKNTETLHCLLQSVQQ 408
           L+  L++G +K      +R   + N   +HCLLQ  QQ
Sbjct: 63  LRKCLLVGMSKS----GSRYGRRSNWFKIHCLLQEQQQ 96


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 103 NHTFQNNIVYDIPAHIERKPGHFNP 177
           N     + V   PA ++  P HFNP
Sbjct: 13  NSEAARDFVQGYPASVQPLPRHFNP 37


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 177 RVEMTWFPFN 148
           ++++TWFPF+
Sbjct: 129 KIDITWFPFD 138


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 327 VLCYC*CTNTREEKY*N 377
           VL  C CTN   E+Y N
Sbjct: 6   VLVVCACTNVLSEEYTN 22


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 124  IVYDIPAHIERKPGHFNPSLTFP 192
            + YD   H +++ GH  P   +P
Sbjct: 2511 MTYDFHGHWDKQTGHVAPLYYYP 2533


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  TFENINHTFQNNIVYDI 138
           T +N +H FQ  +V+DI
Sbjct: 131 TAKNTSHPFQRVLVHDI 147


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 468 LEADEFQTSTRKGYSALCRHRNQ 536
           +E D F  S ++G + + RH  +
Sbjct: 524 IELDRFAVSLKQGTNTITRHSTE 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,634
Number of Sequences: 336
Number of extensions: 4368
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)