Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0085
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 2.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 3.0
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 27 3.0
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 3.0
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 3.0
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 27 3.9
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.9
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.9
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 5.2
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 26 5.2
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 26 6.9
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 25 9.1
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 25 9.1
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 286 WHTLQSSLILGENKYFVIVDARIQEKK--NTETLHCLLQSVQQNEKHFESVL 435
WH + S I+G+N + ++ + +K N E LH L V ++ +S++
Sbjct: 197 WHFPELSKIVGDNYKYAVIVTLVGDKTTINDEMLHDLAAVVDDDKDIAQSII 248
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 556 QHTKHCSWFLWRHSALYPFLVLV 488
+++K+ SW+LWR+ +P +VL+
Sbjct: 509 EYSKY-SWYLWRYPPFHPCIVLL 530
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 651 PCVNNFSRFHPLIFLSNLCFRIHGKFKDIVRCNIQSTAAGFYGGIVHYTLS 499
PC N S P L L I+G FK++ C ++T Y I + ++
Sbjct: 300 PCPNQPS-IQPFGILMMLVSTIYGNFKNLYNCIKRNTIGYIYNSIYDFWIT 349
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 3.0
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Frame = +1
Query: 349 RIQEKKNTETLHCLLQSVQQNEKHFESVL--TWVSFDNDGESWKQMSFRQVQGKGIVHYA 522
+++ KKN HC+ + EKH +S+L V F WK + + + A
Sbjct: 495 KLKLKKNDSLHHCIFPWLPYLEKHADSLLQSVLVQFSLILSPWK-IKNGSIDDFSVWRSA 553
Query: 523 AIETSCSALY--VASDNIFKFTMDSETEITQKNQRMESRKIIYTW 651
+ L V + K MD E I NQ +E II +W
Sbjct: 554 FANDALDRLLEKVILPKLEKL-MDEELVIDPSNQDLEIFFIILSW 597
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 22 LDYWDYSFNYYYIDKNQQVRHVTFENINHTFQNNIVYDIPAHIERKP 162
LD S +++Y ++ + T + H F I+YD H++ P
Sbjct: 358 LDSPGKSGSFFYFSRDYRFIIKTIHHSEHKFLREILYDYYEHVKNNP 404
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 437 VRTDSKCFSFC*TDCSKQCKV 375
VR DSK F FC + C K K+
Sbjct: 22 VRNDSKVFRFCRSKCHKNFKM 42
>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Frame = +1
Query: 502 KGIVHYAAIETSCSAL------YVASDNIF--KFTMDSETEITQKNQRMESRKII 642
KG+V YA + +C+A +V +I+ K+T + E E+ + R+++ KI+
Sbjct: 33 KGVV-YAGVSGTCAAAGYMFGNFVMEKHIYQVKYTEEQEKEVLEVENRLQNLKIV 86
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 601 ITQKNQRMESRKIIYTWLQTSEDVTVTLKLEEKYNKKHFHVLVS 732
+T + +++ KI +TW E + + L+ Y+ +H H+ S
Sbjct: 6 VTNQFSNLQNIKI-FTWKANFESIRINLQHMHLYHYEHIHLFTS 48
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 5.2
Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Frame = +1
Query: 238 IVDTGPRNRSAGRNQLWHTLQSSLILGENKYFVIVDARIQEKKNTE--------TLHCLL 393
I PR S G + L L+ I+G +KY I++ +QE N++ L +L
Sbjct: 273 IAQMKPRAISEGDDGLLEYLED--IIGTSKYKPIIEENMQELSNSDDICAEKESRLKLVL 330
Query: 394 QSVQQNEKHFESVLTWVSFDNDGESWKQMSFRQVQGKGIVHYAAIETSCSALYVASDNIF 573
+ E SVL+++ +N+ + +R + + ++ ++L
Sbjct: 331 SEKAKLEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTLVQNLLNSLEGKLQAHL 390
Query: 574 KFTMDSETEITQKNQRMESRKIIYTWLQTSEDVTVTLKLEEKYNKK 711
+ +E +I++KN+ ++S + + D T K + Y ++
Sbjct: 391 EKFEQTERDISEKNEEVKSLR--EKAAKVKNDCTSEKKTRQSYEQQ 434
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 607 QKNQRMESRKIIYTWLQTSEDVTVTLKLEEKYNKKHFHVLVSPITIKV 750
+KN+ S +I Y W QTS + + + +K + +L+ T+K+
Sbjct: 174 EKNEEKLSNRIRYDWSQTSFSLNIDI-YAKKVKDEDVSLLMEKNTLKI 220
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 335 LLLMHEYKRRKILKLCIAYYNQFNKMKNILSLFLLGCPLIMMESL 469
LLL + + K+ + Y FN++KN L + L I ME++
Sbjct: 336 LLLKNLSSKIKLCNHILMYQATFNEVKNFLQTYSLNMLSIEMENI 380
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 91 FENINHTFQNNIVYD 135
F N+ HT+QN+I++D
Sbjct: 188 FTNLGHTWQNSILFD 202
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/87 (20%), Positives = 35/87 (40%)
Frame = +1
Query: 19 VLDYWDYSFNYYYIDKNQQVRHVTFENINHTFQNNIVYDIPAHIERKPGHFNPSLTFPAS 198
++ + DY F Y Y+ K H + N+ T N + ++IP+ + + S
Sbjct: 1 MMSFNDYIF-YEYLKKTNWNIHNLYCNLTQTADNILNFEIPSGVSCQLSSLTSSNFASGC 59
Query: 199 NLAVVSDGTGMLHIVDTGPRNRSAGRN 279
++ + G + V T + RN
Sbjct: 60 KISAMPILNGSMSYVYTNVNLENLNRN 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,110
Number of Sequences: 5004
Number of extensions: 72200
Number of successful extensions: 205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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